Azotobacter vinelandii DJ: Avin_14810
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Entry
Avin_14810 CDS
T00885
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
avn
Azotobacter vinelandii DJ
Pathway
avn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Avin_14810 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avn03019
]
Avin_14810 (rne)
03009 Ribosome biogenesis [BR:
avn03009
]
Avin_14810 (rne)
Enzymes [BR:
avn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Avin_14810 (rne)
Messenger RNA biogenesis [BR:
avn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Avin_14810 (rne)
Ribosome biogenesis [BR:
avn03009
]
Prokaryotic type
rRNA processing factors
Avin_14810 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ACO77697
UniProt:
C1DR24
LinkDB
All DBs
Position
complement(1461734..1465153)
Genome browser
AA seq
1139 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFKKSPEGRINIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLDVPADMGLIVRTAGLGRSSEELQW
DLDYLVQLWTAIKEASLDRSPPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALS
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSID
INSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEDKM
REALEADRARVQIGRISRFGLLEMSRQRLRPSLGETSGIVCPRCSGQGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRVRIVILPSDHMETPHF
EVQRLRDDSPEVQSAQSSYEMTPAEVEEVQLVSSTRTLVRQEAAVKTAPPRNALVPVPAE
IPAAPAAAPHPALELNLFKGLVKSLVSLFAGKEIAKPVVAERLVEERLTRSSEERRSSRQ
QNRRRESRHGRDEERSRPREERQLREVREERVPRPAREERPAREERHPSEFVEPREPRES
RRERPPREERAPREERQAVETMEPREPREPRETRRERPPREERRRELREPLDIQEIQESP
REERTVRPPREELPQREERQPHEERPVVNEPKIPEEQVLPHEEIQEEEAEASGEERPRRR
SRGQRRRSNRRERQRDGQGSEIEGVEEDEAAAVAAESTAATVSAVPAQADEATAEASTTA
SPPSGQPAVEETQPAIETVAIAAPVAETAPVEIPQPILQPEQVQPAGAEEPVAEPSEALQ
VPAQPVQEPPATTEPSAEVEVPRSTARAANDPREVRRRKREAAEAEAKRAAEATKAAEAA
KIAEASAIAAAAAVTETRAEAGPVPVASTPEAPEERIEIPLEQPRTASEPSPASMESVEL
PSEQVSPEPEAFSTVAEPVEAPFELIQPEVPAAVAAEEPIETTSEQSAPVEEERSEDRKE
QQTLDLLPVAGQPEELVDEAQIAPGVENEEVAEPRRKEAESGNATAEAKLTDEQDRTAG
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaatgctgattaacgcaactcagcccgaggagttgcgtgttgccctggtcgat
ggccaacgcctctatgacctggatatcgaatcgggcgcccgcgaacagaagaaggccaat
atctacaaaggccgtatcacccgggtcgagccgagcctcgaagcggcgttcgtcgacttc
ggcgccgagcgccacggcttcctcccgctcaaggaaatctcccgcgagtacttcaagaag
tctcccgaaggccgcatcaacatcaaggacgtgctctccgaaggccaggaagtcattgtc
caggtcgagaaggaagagcgcggcaacaagggcgcggccctgaccaccttcatcagcctc
gccggccgctatctggtgctgatgccgaacaatccgcgagccggcggcatctcccggcgc
atcgagggcgaagagcgcaacgaactgcgcgaggccctgaacggcctcgacgtgcccgcc
gacatgggcctgatcgtgcgcaccgccggcctcggccgctccagcgaagaactccagtgg
gacctcgactacctggtccagttgtggaccgcgatcaaggaagcctcgctggaccgctcg
ccccccttcctgatctaccaggaatccaacgtcatcatccgggcgatccgcgactatctg
cgccaggacatcggcgaagtgctgatcgacagcgtggaagcccaggaagaagccctgagt
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtg
ccgctgttcaaccgcttccagatcgagagccagatcgaaaccgccttccagcgtgaagtg
aagctgccgtccggcggctccatcgtcatcgatccgaccgaagccctggtatccatcgac
atcaactcggcgcgcgccaccaagggcggcgacatcgaggaaaccgcgctgcagaccaac
ctggaggcggccgaggagatcgcccgccagttgcgcctgcgcgacatcggcggcctgatc
gtcatcgacttcatcgacatgacgccggcgaagaaccagcgcgccgtcgaggacaagatg
cgcgaggccttggaggccgaccgtgcgcgcgtgcagatcggccgtatctcgcgcttcggt
ctgctggaaatgtcccgtcagcgcctgcgcccctccctcggcgagaccagcggcatcgtc
tgcccgcgttgcagcggccagggcatcatccgcgacgtcgaatccctgtccctggcgatc
ctgcgcctgatcgaggaagaggccctgaaggaccgcaccgccgaagtgcgcgcccaggtg
ccgattccggtcgccgccttcctgctcaacgaaaagcgcaactccatcaccaagatcgag
ctgcgcacccgcgtgcgcatcgtcatcctgccgagcgatcacatggagacgccccacttc
gaagtacagcgcctgcgcgatgacagcccggaagtgcagagcgcccagtcgagctacgaa
atgaccccggcggaagtggaggaagtccaactggtcagctccacccgcaccctggtgcgc
caggaggctgcggtcaagaccgctccgccgcgcaacgccctggtgccggttccggccgaa
ataccggcggcgccggcggcagccccccacccggccttggagctcaatctgttcaaggga
ctggtgaagtcgctggtcagcctgttcgccggcaaggaaatcgccaagcccgttgtcgcc
gagcgcctggtcgaggagcgcctgacgcgcagcagcgaggaacgccgcagcagccgccag
cagaatcgtcgccgcgagagccgtcatggccgcgacgaggagcgcagcaggccacgcgag
gagcgtcaacttcgcgaagtgcgcgaagaacgggtgccgcgcccggcacgcgaggaacgc
ccggcacgcgaagagcgtcaccccagcgagttcgtggaaccccgggagccacgggaaagc
cgccgcgagcgcccgccccgcgaggagcgtgcgccacgcgaagagcgccaggccgtggaa
accatggagccgcgcgaaccgcgcgagccacgggaaacccgccgcgagcgcccgccccgc
gaagaacgccgccgcgaactgcgcgaaccgctcgatatccaggaaatccaggaaagcccg
cgggaagagcgcactgtccgcccgccgcgcgaggagcttccccagcgggaagagcgtcag
ccccatgaagaacgtccggtggtgaacgagccgaagattcccgaggagcaagtgctgccc
cacgaggaaattcaggaagaagaggccgaggccagtggcgaggagcgtccccgccgtcga
tcccgcggccagcgccgccgcagcaatcgccgcgagcgccagcgcgacggccagggcagc
gaaatcgagggcgtcgaagaagacgaggccgctgccgtcgcggcggagtccacggccgca
acggtaagcgccgtaccggcccaggccgacgaagccacggcggaagcctccaccactgcc
agcccgcccagcggtcagccggcagtcgaggaaactcaacccgcaatcgaaaccgtcgcg
atcgctgctcccgtcgccgagaccgcccctgtggaaattccgcagcccatcctccagccc
gaacaggtacaacctgccggagccgaggagccggtagccgagccgagcgaggcactgcaa
gtacctgcgcagccggtccaggagccgccggcaaccaccgagccctcggccgaggttgag
gttccgcgcagcaccgcccgcgcggccaacgacccacgcgaagtccggcgccgcaagcgc
gaagctgccgaggcggaagccaagcgggccgccgaagccacgaaggcagcggaagccgca
aagattgcggaggccagcgccatcgctgccgccgcggcggtaaccgagacgcgggcggag
gccggccccgttccggtcgccagcacgccggaagcaccggaggaaaggatcgagatcccg
ctcgaacagcctcggaccgccagcgagccatctccggcatccatggaatcggtcgaattg
ccgagcgagcaggtcagtcccgagccggaagccttctccacggttgccgaaccggtcgag
gctccgttcgagctgatacagccggaggtaccggctgccgtcgcagcggaagaaccgatc
gaaacgacgtccgagcaatcggctcccgtggaggaagagcgctccgaagatcggaaagag
cagcagacgctcgacctcctgcccgtcgccgggcaaccggaagagctcgtcgacgaagcg
cagatcgctcccggagtggaaaacgaggaggttgccgagcctcggcgcaaggaagccgaa
agcgggaatgcgaccgccgaggcgaagctgaccgacgaacaggatcggacggctggctga
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