Azotobacter vinelandii DJ: Avin_22650
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Entry
Avin_22650 CDS
T00885
Name
(GenBank) RNA polymerase sigma factor, ECF subfamily
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
avn
Azotobacter vinelandii DJ
Pathway
avn02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
avn00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Avin_22650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avn03021
]
Avin_22650
Transcription machinery [BR:
avn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Avin_22650
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Rv2175c_wHTH
HTH_23
PhyR_sigma-like
Sigma70_ECF
HTH_24
Terminase_5
DUF3080
HTH_Tnp_ISL3
HTH_28
phiKZ_IP
Motif
Other DBs
NCBI-ProteinID:
ACO78456
UniProt:
C1DGE5
LinkDB
All DBs
Position
complement(2262047..2262571)
Genome browser
AA seq
174 aa
AA seq
DB search
MTASSQVSPALRLQVLHRLFGEHHGWLFGRLRARLGCAHDAADIASETFTQVVALDDPGA
IREPRALLTTIAKRLIYASWRRRDLERAYLEVLAQQPEAVQPSPEETVLALEALAAIDQL
LDGLSPKARAAFLYSQLEGLNYTEIASRLGVSVTRVHQYVVKGLTTCYLALEAA
NT seq
525 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcctcctcgcaagtctcccccgcactgcgcctccaggttctccatcgcctgttc
ggcgagcatcacggctggctgttcgggcggttgcgcgcccggctcggctgcgcccacgac
gccgccgacatcgcctcggaaaccttcacccaggtggtcgccctggacgatcccggcgcc
atccgcgagccgcgcgccctgctcaccaccatcgccaagcgcctgatctacgccagttgg
cgccgccgcgacctggaacgcgcctacctggaagtcctggcgcagcagccggaggccgtc
cagccttctcccgaggaaaccgtcctggccctggaagccctggcggccatcgaccagttg
ctcgacgggctgtccccgaaggcccgcgcggcctttctctacagtcaactggaaggcttg
aactatacggagatcgccagccgcctgggcgtatccgtcacccgcgtgcaccagtacgtg
gtcaaggggctgaccacctgctacctggcgctcgaagcggcatga
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