Azotobacter vinelandii DJ: Avin_46150
Help
Entry
Avin_46150 CDS
T00885
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
avn
Azotobacter vinelandii DJ
Brite
KEGG Orthology (KO) [BR:
avn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
avn03016
]
Avin_46150
Enzymes [BR:
avn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Avin_46150
Transfer RNA biogenesis [BR:
avn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Avin_46150
Prokaryotic type
tRNA splicing ligases
Avin_46150
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ACO80724
UniProt:
C1DHZ1
LinkDB
All DBs
Position
complement(4691194..4692624)
Genome browser
AA seq
476 aa
AA seq
DB search
MNLSKFRQRGPFEWELPASGRMRVPGVIFASQALVEAMDDKVGEQIANVASLPGIVEAAY
AMPDAHWGYGFPIGGVAAFDAGEGGVVSAGGVGFDISCGVRSLHTGLKLADVEALKPRLA
DVLYRRIPAGLGSTGALRLSAREMDAMLLGGARWAVEAGFGDEADLARIEESGRMAGADP
AAVSEQAKKRQRDEMGTLGSGNHYLEVQVVDELFDIRAARAYGLSEGDVLATIHCGSRGM
GHQIGTDYLRAMVIAAARAGIALPDRELACAPLDSELGRRYLGAMRAAINCALANRQILT
RLTRQAFAELFPGIRLPLLYDVSHNTCKEEWHVLGGQRRRLFVHRKGATRAFAAGHAELP
AEYRQVGQPVLIGGSMGTASWVLAGAAGTGEHAFASACHGAGRAMSRHEALRRWQGRSVV
DELAARGILIRSPSLRGVAEEAPLAYKDVGAVVEAAERAGLAVRVARLRPLVCIKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgaatctctcgaagtttcgccagcgcggccccttcgaatgggagctgccggccagtggg
cggatgcgcgtgccgggggtgatcttcgcctcgcaggcgctcgtcgaggcgatggacgac
aaggtcggcgagcagatcgccaatgtcgccagcctgccgggcatcgtcgaagccgcctac
gccatgcccgatgcgcactggggctacggtttcccgatcggcggggtggcggccttcgat
gccggggagggcggggtggtgtcggccggcggggtgggcttcgacatctcctgcggggtg
cgcagcctgcataccggactcaagctggccgacgtggaagcgctcaagccgcgcctggcc
gacgtgctctatcggcgcattccggccgggctcggcagcaccggggcgctgcgcctgtcg
gcccgggagatggatgccatgctgctcggcggcgcgaggtgggcggtcgaggcgggcttc
ggcgacgaggcggatctggcgcgcatcgaggagtccggccgcatggccggcgccgatcct
gccgctgtctcggagcaggcgaagaagcgccagcgcgacgagatgggcactctcggctcg
ggcaaccattacctggaggtgcaggtggtcgacgaactgttcgacatccgggcggcccgg
gcctatggcttgtccgagggcgacgtgctggcgaccatccactgcggctcgcggggcatg
ggccaccagatcggcaccgactacctgcgcgccatggtgatcgccgccgcgcgggcgggc
atcgccctgccggaccgcgagctggcctgtgcgccgctggattccgagctgggccggcgt
tacctcggcgccatgcgcgcggcgatcaactgcgcgctggccaaccggcagatcctcacc
cgactgacccggcaggccttcgccgagctgtttcccggcatccgcctgccgttgctctac
gatgtgtcgcacaacacctgcaaggaggaatggcatgtcctcggcggccagcggcggcgg
ctgttcgtccaccgcaagggcgcgacccgcgccttcgccgccgggcacgccgagctgccg
gcggagtaccgccaggtcggccagccggtgctgatcggcggcagcatgggcaccgcctcc
tgggttctcgccggcgcggcgggtaccggcgagcacgccttcgcctcggcctgccacggc
gccggccgggcgatgagccggcacgaggcgctgcgccgctggcagggacgctcggtggtg
gacgagctggccgcccgtggcatcctgatccgcagcccgagcctgcgcggcgtggccgag
gaagcgccactggcctacaaggacgtcggtgcggtggtggaggcggccgaacgggcggga
ctggcggtgcgggtggcgcggctgcggccgctggtgtgcatcaaggggtga
DBGET
integrated database retrieval system
