Aeromonas veronii TH0426: AMS64_09980
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Entry
AMS64_09980 CDS
T04529
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
avo
Aeromonas veronii TH0426
Pathway
avo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMS64_09980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avo03019
]
AMS64_09980
03400 DNA repair and recombination proteins [BR:
avo03400
]
AMS64_09980
Enzymes [BR:
avo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AMS64_09980
Messenger RNA biogenesis [BR:
avo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AMS64_09980
DNA repair and recombination proteins [BR:
avo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AMS64_09980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
UVSSA_N
TniB
Motif
Other DBs
NCBI-ProteinID:
AMQ42675
LinkDB
All DBs
Position
2137738..2139654
Genome browser
AA seq
638 aa
AA seq
DB search
MIPSLLNQYFGFSALRPGQEAVISRVLAGQSAAAIFPTGSGKSLCYQLPALALPHLILVI
SPLLALMHDQLAFLKSKGISAATLDSSQSPEESRRVMQQALDGQLKILMISVERLKNERF
RRFIQQVPLSLLVVDEAHCISEWGHNFRPDYLKLPSYRHDLKIPQVLLLTATATPAVIQD
MQTKFGIAPEGVVVTGFYRFNLALAVIPLAPDARDSWLAQELANDPTAPTIVYVTLQHTA
EACAEQLIREGINARAYHAGLDSALRSQIQHDFMAGKVDCIVATIAFGMGIDKADIRRVI
HYDLPKSIENYSQEIGRAGRDSQPSRCIVLANQSQLPVLENFVYGDTPDLSAILQLLAII
KQSGNEWEFTLLRLSNDTNIRQLPLKTLLVYLEMAGIITPAYSYYADYRFKFVLDKGEIV
SRFNPKRRQFLEQLFACAPQARSWCTMDFDALWQGYQGERQRAVAALDYLQQQGWIELES
KQMTEVYRITRQEWDNEQEANALHALFLQKEQSELARLQAMLDFFTSSECLSHRLARYFA
DEVAPVHCGHCSVCRGEVAHLPPLPSLTMPNEAGIRAWCDPLIAKTGSVDARVLARFLCG
ITTPLTSRVKAKSLAGAGQLAAHPFASVMAAVQQAYPC
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgatcccatccctgctcaaccaatattttggtttctccgcactcaggccaggtcaggaa
gcggtgatcagccgggtgctggcaggtcagagtgccgccgccatctttcccaccggctcc
ggcaagtcgctctgttatcaactgcctgccctcgccctgcctcacctgatcctggttatc
tcgccgctgctggcgctgatgcacgatcaactcgccttcctcaaaagcaagggaataagc
gccgctaccctcgactcaagccagagcccggaggagagccgacgagtgatgcagcaggcg
ctggatggccagctcaagatcctgatgatttcggtagagcgactcaagaacgagcgcttt
cgccgctttatccagcaagtgccgctctcgctgctagtcgtcgatgaggcgcactgtatc
tcggagtggggccacaactttcgccccgactacctcaagctgccgagctatcgccatgat
ctgaagatcccgcaggtgctgctcctcaccgccaccgccacaccggctgttattcaggat
atgcagaccaagttcggcatcgcgccggaaggggtcgtggtcaccggtttctaccgcttc
aatcttgctctggcggtcattcccctggcgcccgatgcgcgggatagctggctcgcgcag
gagttggccaacgatccaacggcccccaccatcgtctacgtcaccttgcagcacaccgcc
gaagcctgtgctgagcaactcattagagaagggatcaacgcccgcgcctatcatgccgga
ctcgactcggcgctgcgcagtcagatccagcacgacttcatggcgggcaaggtggattgc
atcgtcgccaccatcgcctttggcatggggatcgacaaagcggatatccggcgggtcatt
cactacgatctgcccaaatctatcgagaactacagccaggagattggccgcgccggacgg
gatagccaaccatcgcgctgtatcgtgctggccaaccagagccagctgccggtgctggag
aacttcgtctacggcgatacgccggatttgagtgccatcctccagctccttgccatcatc
aagcagagcgggaacgagtgggaattcaccctgctgcgcctatccaacgacaccaatatc
cgccagttgccccttaaaaccctgctggtctatctggagatggcgggcatcatcaccccg
gcctacagctactacgccgactaccgcttcaagtttgtgctggataaaggcgagatagtg
agccgcttcaatccgaaacgccgccagtttctggagcagctgttcgcctgtgccccgcaa
gcgcgcagctggtgcaccatggactttgacgccctctggcagggctatcagggggagcgg
cagcgggccgttgcggcgctcgactacctgcagcagcaaggctggatcgagcttgaaagc
aaacagatgaccgaggtctaccggatcacccgtcaggaatgggacaacgagcaggaagca
aatgccctgcatgccctgttcctgcaaaaagagcagagcgagctggccagactgcaagcc
atgctcgactttttcacctcaagtgagtgcctgagccaccgcctcgcccgctattttgcc
gatgaggtggcgccggttcattgtggccactgttcggtttgtcgcggcgaggtggcgcat
cttcctcccctaccctcactgaccatgccaaacgaggcggggatccgcgcctggtgcgat
ccgctgattgccaagacaggttcggtggatgctcgtgttctggcccgtttcctgtgcggc
atcaccacaccgctgaccagccgggtcaaggccaaatcgctggcgggtgcaggccagttg
gccgcgcacccgtttgccagcgtcatggcggcagtgcaacaagcctacccttgctag
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