Aeromonas veronii TH0426: AMS64_17965
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Entry
AMS64_17965 CDS
T04529
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
avo
Aeromonas veronii TH0426
Pathway
avo03030
DNA replication
avo03430
Mismatch repair
avo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
avo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AMS64_17965 (dnaE)
03430 Mismatch repair
AMS64_17965 (dnaE)
03440 Homologous recombination
AMS64_17965 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avo03032
]
AMS64_17965 (dnaE)
03400 DNA repair and recombination proteins [BR:
avo03400
]
AMS64_17965 (dnaE)
Enzymes [BR:
avo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AMS64_17965 (dnaE)
DNA replication proteins [BR:
avo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AMS64_17965 (dnaE)
DNA repair and recombination proteins [BR:
avo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AMS64_17965 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AMQ44103
LinkDB
All DBs
Position
complement(3942764..3946243)
Genome browser
AA seq
1159 aa
AA seq
DB search
MADPRFIHLRVHSDFSMVDGLQKINPIVGAAAANNMPALALTDQMNMCGLVRFYGAAHGK
GIKPIVGADFWVQSDELGDEQFRLTLLAMDNDGYQNITLLISRGYQRGHVQGRPVIDKSW
LAEHAKGVIVLSGGREGDVGKFLLKGNRQMTEQCVAFYQTHFPDAYYLELLRTGRPDEEV
YLHMAVAIATEFELPVVATNEVVFLNADDFDAHEIRVAIHDGYTLMDKRRPRRYSPQQYL
RSQEEMAELFADIPEALENTVEIAKRCNVTVRLGEYFLPNFPTGDMTTEDFLVAKSKEGL
EERLEFLFPDPAVRAERRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIEHVSD
MYGRDAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLIPPDPGMTLAKAFEAEPK
LPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKITDFAPLYCDDEGHHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKPPVDIAAIPIDDKKSFDLL
QRYETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGNEA
ISYPDEKWQHESLKPILEPTYGIILYQEQVMQIAQTLAGYTLGGADMLRRAMGKKKPEEM
AKQRAGFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPA
EFMAAVMTADMDNTDKIVTLVDECQRMGLTVIPPDVNTGRYRFSVNEDGHIVYGIGAVKG
VGEGPIDAILSARDQDGPFRDLFDFCNRVDIKKLNKRVMEKLILSGAMDRLGPHRAALMA
TLEEAMRAAEQHAKAQAVGQVDMFGVLTEEIDDVKKAFANVPHWPDKVWLEGERETLGLY
LTGHPINQYSSELRRYTSGRLCDLHPTSRDTVTTAAGLVIAARSMVTKRGNKMGIFTLDD
RSGRLDVTLFSEALEKYEELMQKDRILVVSGQVSFDDFSGGLKMSARELLDINDARERFA
RAIRISLDEQRIDDRFFPRLCEILEPARAGVCPVQVNYRRPGSRVRLTLGTEWRVTPTDQ
LIDDLRVLLGRERVELVFD
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggctgacccccgttttatccacctgcgagtccactccgacttctccatggtcgatggc
ctgcagaagatcaaccccattgtcggggcggctgcggccaacaacatgccggcgctggcg
ctgaccgatcagatgaacatgtgtggtctggtgcgcttctatggcgcagcccacggcaag
gggatcaaacccatcgtcggtgccgacttctgggtgcagagcgatgagctcggcgacgag
cagttccgtctcaccctgctagccatggataacgacggctaccagaacatcaccctgctt
atttcccgcggttaccagcgcggccacgtgcaagggcggccggttatcgacaagagctgg
ctcgccgagcatgccaagggggtgatcgtcctctccggcggccgcgagggggatgtgggc
aagttcctgctcaagggtaaccggcagatgaccgaacagtgtgtcgccttttatcagacc
cacttccccgatgcctactacctcgaactgctgcgtaccggtcgacccgacgaagaggtc
tacctgcacatggcggtggccatcgccaccgagttcgagctgccggtggtcgccaccaac
gaggtggtgttcctcaacgccgatgacttcgacgcccacgagatccgggtcgccatccac
gatggctataccttgatggacaaacgccgcccccgtcgctacagcccccagcagtacctg
cgcagtcaggaggagatggcggagctgtttgccgacattcccgaagcgctggaaaacacg
gtggagatagccaagcgctgcaacgtgacggtgcgtctcggcgaatacttcctgcccaac
ttcccgaccggcgacatgactaccgaagattttctggtggccaaatcgaaagagggtctg
gaggagcgtcttgagttcctgttcccggatccggcggtgcgtgccgagcgtcgtcccgag
tatgacgagcgtctcgacatcgagctgaaagtgatcaaccagatgggcttcccgggttac
ttcctcatcgtgatggagtttatccagtggtccaaggacaacggcattcccgttggcccg
ggccggggctcgggtgcaggttctctggtggcgtacgctctcaagatcactgacctcgac
ccgctggaatttgacctgctgttcgaacgtttcctgaaccccgagcgggtatccatgccc
gacttcgacgtcgacttctgcatggacaggcgcgacgaggtgattgaacacgtctccgac
atgtatggtcgggatgcggtctcccagatcatcaccttcggcagcatggcggccaaggcg
gtggtgcgggacgtgggccgggtgctgggccatgcctacggctttgtggatcgcatctcc
aagctaatcccgccggatccggggatgacgctcgccaaggcattcgaggccgagcccaag
ctgcccgagctctacgagcaggatgaggaggtcaaagacctcatcgatatggcccgccgc
ctggaaggggtggtgcgcaacgccggtaaacacgcaggtggcgtggtgatcgcgcccacc
aagatcaccgactttgcgccgctctactgcgatgacgaaggccatcacccagtcacccag
ttcgacaagaacgatgtggaatacgccggtctggtgaagttcgacttcctgggtctgcgc
accctcaccatcatcgactgggcgctcggcatgataaacccgcgtcttgccaaagagggc
aagccgccagtggatatcgccgccatccccatcgatgacaagaagtcgttcgacctgctg
cagcgctacgagaccacagcggtattccagctcgaatcccgcggcatgaaggatctcatc
aagcggctgcgccccgactgcttcgaagacatgatcgctctggtggccctgttccgaccg
ggcccgctccagtctggcatggtggataacttcatcgaccgcaagcacggtaatgaagcg
atctcctatccggacgagaagtggcaacacgagagcctgaaaccgattctggagcccacc
tacggcatcatcctctatcaggagcaggtgatgcagatcgcccagaccctggcgggttat
acgctgggtggcgcggatatgctgcgccgggcgatgggcaagaaaaagcccgaggagatg
gccaagcagcgggccggtttcgaggagggcgccgtcaagaatggcgtcgacggcgaactg
gcgatgaagatcttcgatctggtggagaagtttgcgggctacggcttcaacaagtcccac
tccgccgcctatgcgctggtctcctaccagaccctctggctcaagacccacttcccggcc
gagttcatggcggcggtgatgaccgccgatatggacaacaccgacaagatcgtgaccctg
gtggacgagtgccagcggatggggctcaccgtgatcccgccggatgtgaacaccggccgc
tatcgcttctcggtcaacgaagatggccatatcgtctacgggatcggggcggtgaagggg
gtcggtgaaggccccatcgatgcgatcttgagcgcccgggatcaggacggcccgttccgc
gatctgttcgacttctgcaaccgggtcgatatcaagaagctgaacaagcgggtgatggag
aagctgatcctctccggcgccatggatcggctcggcccgcaccgtgccgccctgatggcg
accctggaggaggcgatgcgggccgccgagcagcacgccaaggcgcaggcggtggggcag
gtcgacatgttcggcgtgctcaccgaagagattgacgacgtcaagaaggcgtttgccaat
gtgccgcactggcctgacaaggtgtggctggaaggggagcgcgagaccctcgggctctat
ctcaccggccaccccatcaaccagtacagcagcgaattgcgtcgttatacctcgggtcgc
ctgtgcgatctgcatcccacttcccgcgatacggtgaccacggcggcggggctggtgatc
gcggcccgcagcatggtgaccaagcgtggcaacaagatggggatcttcaccctggacgac
cgttccggtcgcctcgatgtgaccctgttcagtgaagcgctggaaaaatatgaagaattg
atgcaaaaagaccgcattttggtggtttctggacaggtcagctttgatgacttctccggt
ggccttaaaatgtcggctcgagaattactggatatcaacgatgcgagggagcgttttgcc
agagcaatccgcatctccctcgatgaacagcggattgatgatcgctttttcccgcgtttg
tgcgagattttggagcccgcccgtgccggagtctgtccggttcaggtaaactatcgtcgc
cccggctcccgggtgcgattgacgctcggtaccgagtggcgggtgacgcccaccgatcaa
ctgatagatgacttgcgagtcctgcttggacgagagcgggttgaattggtttttgattag
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