Aeromonas veronii TH0426: AMS64_20485
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Entry
AMS64_20485 CDS
T04529
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
avo
Aeromonas veronii TH0426
Pathway
avo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMS64_20485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avo03019
]
AMS64_20485
Enzymes [BR:
avo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AMS64_20485
Messenger RNA biogenesis [BR:
avo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AMS64_20485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SBF_like
Motif
Other DBs
NCBI-ProteinID:
AMQ44569
LinkDB
All DBs
Position
complement(4462227..4463447)
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AA seq
406 aa
AA seq
DB search
MTFSELALHPALLASLPATLQTPTRIQQLAIPAALAGQDLLALAQTGSGKTLAFGLPLLQ
RLDPASSQVQGLVLVPTRELATQVTAALKEGAEVLGLRIVTLCGGVAQERQQAELALGPQ
LLVATPGRLRDLLTQQLLGLDGLQLLVLDEADRLLEMGFAPDIKALLGFIPADRQTLLFS
ATLPAELEALANGLLREPTRIEATPLNSVVNEIEERLYLVNKSSKVPALICLLKEQAWPQ
VLVFISARDDADGVARKLAKAGIAVAALHGEKEQAVREQALGDFKEGKIRVLVATDLMAR
GIHVEALPVVINLDLPASAPVYVHRIGRTARAGREGLAISLVCHGESDMLQAIRTLTGRE
LPLGDLAGFPVTDQPASGEGKRPPRDKQANRRTQAKRSVKQFKGKR
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgacctttagcgaacttgccctccatcccgctctgcttgcctctttgcccgccaccttg
cagacgccgacccgcatccagcagctggccattccggcggcgctggcggggcaggatctg
ctggcgctggcccaaaccggcagcggcaagaccctggcgtttggcttgccgctgctgcaa
cggctggatcctgcctccagtcaggtgcagggtctggtgctggtgccaactcgcgagctg
gcgactcaggtcactgccgcgctaaaagagggcgccgaggtgctggggctgcgcatcgtg
acgttgtgtgggggcgttgcgcaggagcggcaacaggccgagctggcgctggggccacag
ctgctggtcgccacgccggggcggctgcgggatctgctgactcagcaactgttggggctg
gatggtttgcaactgctggtgctggatgaagcggatcgcttgctggagatgggctttgct
cccgacatcaaggcgctgctcggctttattccggcggatcgccaaaccctgctcttctcc
gccaccttgcctgccgagctggaggcgctggccaacggcctgctgcgtgagcctacccgt
atcgaggccacccccctcaacagcgtggtgaacgagatcgaagagcggctctatctggtc
aacaagagcagcaaggtcccggcgcttatctgcttgctcaaggagcaggcgtggccgcag
gtgctggtctttatcagtgcgcgggatgatgccgacggggttgccagaaagctggccaag
gcgggcattgcggtggccgccctccatggcgagaaggagcaggcagtgcgtgagcaggcg
ctcggcgatttcaaagagggcaaaattcgggtgctggtggccaccgacctgatggcgcgt
ggcatccatgtggaggcgctgccggtggtgatcaatctggacttgcccgccagcgccccc
gtctatgtacaccgcatcggtcgtaccgcccgggctggccgcgaggggctggccatctcg
ctggtttgtcatggcgagagtgacatgctgcaagctatccgcaccctgaccggccgcgag
ctgccgttgggcgatctggctggattcccggttaccgaccagcctgccagcggggagggc
aagcgcccccctcgtgacaagcaggccaatcgccgtactcaggccaaacgcagcgtcaag
cagttcaagggcaagcgctga
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