Arcobacter venerupis: AVENP_0110
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Entry
AVENP_0110 CDS
T06858
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
avp
Arcobacter venerupis
Pathway
avp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AVENP_0110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avp03019
]
AVENP_0110
03009 Ribosome biogenesis [BR:
avp03009
]
AVENP_0110
Enzymes [BR:
avp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AVENP_0110
Messenger RNA biogenesis [BR:
avp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AVENP_0110
Ribosome biogenesis [BR:
avp03009
]
Prokaryotic type
rRNA helicases
AVENP_0110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QKF65692
UniProt:
A0AAE7E376
LinkDB
All DBs
Position
100532..102229
Genome browser
AA seq
565 aa
AA seq
DB search
MTFNEFNFKEQLQKAIEEAGFKEPSPIQEQAIPVITSGKDMVGQAHTGTGKTAAFGLPIL
NKLKGKSGVEAVVIVPTRELAMQVSDELYRFGKFLGLNTATVYGGQAYARQIKLIETASI
IVATPGRFLDLLRGQKIDIKPEYVILDEADEMLDMGFLDDIKEIFTFLPKERQTLLFSAT
MPTAIKNLAKTILNEPEFITLTKSDVTNAKITQTFYVVDERERDDALIRLYDYKNPTKSI
IFCRTKKEVDRLSTFMVSQGFMAKGLHGDMEQRQREEAIRAFKTSKLEILIATDVAARGL
DVNDVSHVFNYHLPFDSESYVHRIGRTGRAGKEGVAISIVTPHEFRMLQKIEKNIGTKLE
GKAIPNIDSVKEKKIVELKNQISEQEISDYALALVEDLKEEFDISTIAFKLASMISASTL
VQGNNNIGKSESDIKRLIENSSRYDNDGSSSGRNSRGGRGGRFGGSRGGDSRGGDRGPRT
GDRNSRGGDRDRAPRGDRPSGDRAPRPSGDRPAGDRKPSGDRAPRGDRPSGDRSPRPSGD
RKPSGDRAPRPSGDRPSGDRSRKRD
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgacttttaacgaatttaacttcaaagaacaattgcaaaaagcaattgaagaagcaggt
tttaaagaaccaagtccaatacaagaacaagcaattccagttattacatctggaaaagat
atggttgggcaagcacatacaggaactggtaaaacagcagcattcggacttccaatttta
aataaactaaaagggaaatcaggtgttgaagcagttgtaattgtgccaacaagagaactt
gcaatgcaagtttcagatgaattatacagatttggtaaattcttaggattaaatactgca
actgtatacggtggtcaagcgtatgctagacaaatcaaacttatagaaactgcaagtatt
attgttgcaactccaggtagatttttagatttactaagaggacaaaaaatcgatattaaa
ccagaatatgttattcttgatgaagcagatgaaatgcttgatatgggattcttagatgat
attaaagagatttttactttcttaccaaaagaaagacaaactttattattctctgcaact
atgccaactgctattaaaaatttagcaaaaactattttaaacgagccagaatttattaca
ttaactaaaagtgatgtaactaatgcaaaaattactcaaactttttatgttgttgatgaa
agagaaagagatgatgctttaattagattatatgattataaaaatccaactaagtcaatt
atattctgtcgcactaaaaaagaagttgatagattatcaacttttatggtttctcaagga
ttcatggcaaaaggtcttcatggtgatatggaacaaagacaaagagaagaagcaattaga
gcgtttaaaacttctaaattagaaattttaatcgcaacagatgttgctgcacgtggactt
gatgttaatgatgtttctcacgtatttaattatcatttaccattcgattctgagtcgtat
gtacatagaattggaagaactggacgtgcaggaaaagaaggtgttgctatttctattgta
actccacatgagtttagaatgttacaaaaaattgaaaaaaacataggtactaaattagaa
ggaaaagctattcctaatattgattcagtaaaagagaaaaaaattgttgaattaaaaaat
caaattagtgaacaagaaattagtgattatgcattagcacttgtagaagatttaaaagaa
gagtttgatatttctacaattgcatttaaattagcatcaatgatttcagcatctacatta
gttcaaggtaataataatattggaaaatcagaatctgatattaaaagacttattgaaaat
tcaagtagatatgataatgatggttcatcttctggaagaaattcaagaggtggaagaggt
ggaagatttggtggttctcgaggtggagattcaagaggtggagatagaggtcctagaact
ggggatagaaactcaagaggtggagatagagatagagccccaagaggtgatagaccatca
ggcgatagagctccaagaccatcaggtgacagaccagctggagatagaaaaccaagtggt
gatagagctccaagaggtgatagaccatcaggagatagatcacctagaccatcaggtgat
agaaaaccaagtggcgatagagcaccaagaccatcaggtgatagaccatctggcgacaga
agtagaaaaagagattaa
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