Arcobacter venerupis: AVENP_1176
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Entry
AVENP_1176 CDS
T06858
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
avp
Arcobacter venerupis
Pathway
avp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AVENP_1176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avp03019
]
AVENP_1176
Enzymes [BR:
avp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AVENP_1176
Messenger RNA biogenesis [BR:
avp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AVENP_1176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
P-loop_SecA
CMS1
HI1480
Motif
Other DBs
NCBI-ProteinID:
QKF66731
UniProt:
A0AAE7E4I6
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All DBs
Position
1189978..1191363
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AA seq
461 aa
AA seq
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MSFSNLGLCAELLRAIKEEGYTTPTPIQSKSIPVILSNKDVLAAAQTGTGKTAGFTLPLL
QRLKTAYNKDKKSHVRALILTPTRELAAQVAQSVETYGKYLPFKSAVVFGGVGINPQKAL
LRKGVDIVIATPGRLLDLISQDCLDLSKIEFFVLDEADRMLDMGFINDIKKVLAIIPKQR
QNLLFSATFSDDIKKLADSLLNSPVLIEAATANSTSHKVEQSVHLVDRERKKELLLHLVN
KNNWKQVLVFTRTKHGANKLSEALVKDGISSSAIHGNKSQGARTKALDDFKAGNVRVLVA
TDIAARGIDIDNLPHVINFELPNIAEDYVHRIGRTGRAGNEGEAISLVCVDEHDYLFGIE
KLIKQKIRKIETIGFKVDPNIKAEPIGNRGNRGNSSNQNRTAKPKDANSSSKKLFGKKRV
EENTSSSAKPKSNNNNRFASKKSETSATSKNRRTNSGFKNN
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttcaaacttaggtttatgcgcagaacttcttcgtgcaattaaagaagagggt
tatacaacgccaacgccaattcaatcaaaatcaattccagtgattttatcaaataaagat
gttctagcagctgctcaaacgggtactggaaaaacggctggatttacacttccactgtta
caaagattaaaaactgcttacaataaagataaaaaatctcatgtaagagctttgatttta
actccaacaagagaactagcagctcaagttgcacaaagtgttgaaacttatgggaaatat
cttccttttaaatcagctgttgtttttggtggagttggaatcaacccacaaaaagcactt
ttaagaaaaggcgtagatattgtgattgcaactcctggaagattacttgatttaatttct
caagattgtttagatttatcaaaaatcgaattttttgttctagatgaagcagacagaatg
cttgatatgggatttataaacgatattaaaaaagttctagcaattattccaaaacaaaga
caaaatcttcttttctcagctactttctcagatgatattaaaaaactagcagatagttta
ttgaattctcctgttttaatagaagctgcaactgcaaatagcacttctcacaaagttgaa
caaagtgttcatttagttgatagagagagaaaaaaagagcttttattacatttagtaaat
aaaaacaactggaaacaagttctagttttcacaagaacaaaacatggtgcaaacaaatta
agtgaagcacttgtaaaagatggtatttcttcatctgcaattcatggaaataaatcacaa
ggagcaagaacaaaagccttagatgatttcaaagctggaaatgtaagagttcttgtggct
actgatatagctgcaaggggaatagatattgataatcttccacatgtaataaactttgaa
ttaccaaatattgcagaagattatgtacatagaataggaagaactggaagagctggaaac
gagggtgaagctatatctttagtttgtgtagatgaacatgattatttatttggaattgaa
aaattaatcaaacaaaaaatcagaaaaattgaaacaatcggatttaaagttgacccaaat
ataaaagctgagccaattggaaatagaggaaacagaggtaatagttcaaaccaaaataga
actgcaaaaccaaaagatgcaaactctagttctaaaaaactttttggtaaaaaaagagtt
gaagagaacacatcttcaagtgcaaaaccaaaaagcaataacaataatagatttgcttct
aaaaaaagtgaaacatcagcaacttcaaaaaacagaagaacaaactcaggttttaaaaac
aactaa
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