Agrobacterium vaccinii: HRR99_06190
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Entry
HRR99_06190 CDS
T08171
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
avq
Agrobacterium vaccinii
Pathway
avq03030
DNA replication
avq03430
Mismatch repair
avq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
avq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HRR99_06190 (dnaE)
03430 Mismatch repair
HRR99_06190 (dnaE)
03440 Homologous recombination
HRR99_06190 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avq03032
]
HRR99_06190 (dnaE)
03400 DNA repair and recombination proteins [BR:
avq03400
]
HRR99_06190 (dnaE)
Enzymes [BR:
avq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HRR99_06190 (dnaE)
DNA replication proteins [BR:
avq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HRR99_06190 (dnaE)
DNA repair and recombination proteins [BR:
avq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HRR99_06190 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
UHS62852
LinkDB
All DBs
Position
circular:1208812..1212306
Genome browser
AA seq
1164 aa
AA seq
DB search
MGEISVTSETAGSGAQTPGFVHLRVHSAYSLLEGALPLKKIMAKAVSDGQPAIAITDTNN
LFVALEFSEKARDEGLQPIIGCQISIDMQDATDDKRGHNNLAKLPAVVVLASNAVGYERL
VDLISRAYLDGEGTGHSVNVPKSWLDEGDNSGLIVLTGASGGPVDMALKAGHATQATRRL
LALKDLFGDRLYIELQRQGHFDRAHERRMIALAYEHDIPLVATNEAFFPSRDDYDAHDAL
MAVAHNAIVSDDTRFRLTPDHYLKSRQEMMALFADIPEALDNTIEIAQRCSYVLKKRGPI
LPRFTGASEDPEEADRAEGAELRRQAVEGLEQRLSALGMAPGYTEQEYRDRLDFELGVIE
RMKFPGYFLIVADFIKWAKNQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLN
PERVSMPDFDIDFCQDRREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPY
GQVDRICKLVPNNPANPTPLSKAIEEEPRFQEEADKEPVVARLLDIAQKIEGLYRHASTH
AAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVDF
VAKRGVTVDLAAIPLEDEKTYEMLARGETIGVFQVESAGMRKALIGMRPDCIEDIIALVA
LYRPGPMENIPVYNARKHGEEEIESIHPTIDYLLKETQGVIVYQEQVMQIAQVLSGYSLG
EADLLRRAMGKKIKEEMDQQRERFVEGAMRNDVSKAQSNTIFDLLAKFANYGFNKSHAAA
YAIVSYQTAYMKAHFPVEFLAASMTLDMANTEKVNDFRQDAGRLGIEIVAPSVQTSHRRF
EPGENRIYYSLAALKGVGEGAVDHIVDVRGDTPFTSLEDFCLRIDPKQINRRVLESLVNA
GAFDCFGKDRAELIGGLDRIIGYAQLAQGRRLSGQHDMFGSGSASGPEKLVLPAYQPWLA
SEKLLREYQVLGFYLTAHPLDTYRAVLDKLRVQNIADFTAAVKQGATAGRLAGTVTGKQE
RKTRTGNKMGIVTFSDASGQYEAVLFSEGLGQYRDLLEVGKSLVITVQAEERPEGIGLRI
QTAESLEQRSVQMQKALRVYLRDSGPMKSLAHHLNKGDGSVYFVLIKDDGQREIELELPG
KYRISPEIGAAFRSAAGVIDVELI
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagatttcagtgaccagcgaaacggctggtagcggtgcacagacacccggcttc
gtccatctgcgggtccattccgcttactccctgcttgagggcgcattgcccttgaagaag
atcatggcaaaggccgtctcggacggccagccagccatcgccatcaccgataccaacaat
ctgttcgtcgcgctcgagttctccgaaaaggctcgagatgagggcttgcagcccatcatt
ggctgccagatttccatcgatatgcaggatgcaaccgatgacaagcgcgggcataacaac
ctcgccaaacttcctgccgtcgttgtgctcgcctccaatgccgttggttatgagcgtctg
gtcgatctgatcagccgcgcctatctggacggcgaaggcacgggccactccgtcaacgtg
cccaagtcatggctggacgagggcgataactccggcctcatcgttctgaccggcgcatcc
ggcggcccagtggacatggcgttgaaggctggccacgccacgcaggcaaccagacggctt
ttggcgttgaaggacttgttcggcgaccgcctctatatcgaattgcagcgacagggtcat
ttcgaccgggcgcatgaacggcgtatgatcgcactcgcctatgagcacgacattccgctg
gtcgccaccaatgaggcgtttttcccgtcacgtgacgactacgatgcgcacgacgcgctg
atggcggttgcccacaatgccatcgtttcggatgacacccgctttcgcctgaccccggat
cattatctcaagagccgtcaggagatgatggcgctctttgcggatattccagaggcgctg
gacaacaccatcgaaattgcgcagcgctgttcctatgtgctgaaaaagcgcgggccgatt
cttccccgctttaccggcgctagcgaagacccggaggaggcggaccgtgcggaaggtgcg
gaactgcgccgtcaggccgtcgaaggtctggagcaacgcctttccgcactcggcatggcg
ccgggatataccgagcaagaatatcgcgaccggctggatttcgagcttggcgttatcgag
cgcatgaaattcccgggctacttcctcatcgttgccgacttcatcaaatgggcgaaaaac
caggatattcctgttggtcccggtcgtggttcgggtgcaggctcgctcgtcgcctatgcg
ctgaccatcaccgatgtcgatccgctgcgtttctcgctgctgttcgagcgcttcctcaat
cccgaacgcgtgtcgatgcccgacttcgatatcgacttctgccaagacaggcgtgaagag
gtcattcgctacgttcagcagaaatatgggcgcgaacaggtggcgcagatcatcaccttt
ggttccttgcaggcgcgcgccgccttgcgtgacgttggccgtgtgctggaaatgccctac
ggccaggtggaccgtatctgcaagctggtgcccaacaatcccgccaacccgacgcccttg
tccaaggcgatcgaggaagagccgcgttttcaggaagaggccgacaaggaacccgtcgtt
gcccgcctgctggatatcgcccagaagatcgaaggcctctatcgccacgcatccacgcac
gccgccggtatcgtgatcggtgaccggcctctgtccaagctcgtgccgatgtatcgcgat
ccacgttccgatatgccggtcacccagttcaacatgaaatgggtggaaagcgccggtctc
gtcaaattcgactttttgggtctgaaaacactcacagtcttgaaggtcgcggtggatttc
gttgccaaacgcggcgttaccgtcgatctggcggcgattccgctggaagacgaaaagact
tacgagatgctggcgcgcggcgagacaatcggggtgttccaggtggaaagcgcgggcatg
cgcaaggcgctgatcggcatgcgccccgactgcatcgaggatatcatcgcactggtcgcg
ctctatcgtcctggcccgatggaaaacatccctgtttacaatgcccgcaagcatggcgag
gaagagatcgagtcgatccacccgaccatcgattatcttctcaaggaaacgcagggcgtt
atcgtctatcaggaacaggtaatgcagattgcccaggttctctcgggctattcgctcggt
gaagccgatcttctgcgccgcgccatgggtaagaagatcaaggaggagatggaccagcag
cgtgagcgtttcgttgaaggcgcgatgcgcaacgacgtctcgaaggcgcagtccaacacc
atcttcgacctgttggccaagttcgcgaactacggcttcaacaaatcccacgccgctgcc
tacgccatagtctcttatcagacggcctacatgaaggcccatttcccggtcgagtttctc
gcggcctccatgacgctggatatggccaacaccgaaaaggtcaacgatttcagacaggac
gctggtcgcctcggcatcgagatcgttgcgccctcggtgcagacatcgcaccggcgtttc
gagccgggcgaaaaccgcatttattactcgctggctgcgctgaaaggcgtgggcgagggt
gcggtcgatcatatcgtggacgtgcgcggcgacacaccgtttaccagcctcgaagacttc
tgcctgcggatcgatcccaaacagatcaaccgccgcgttttggaaagcctcgtcaacgcg
ggtgccttcgattgctttggcaaggaccgcgccgaactgatcggcgggctggatcgcata
atcggttatgcccaacttgcgcagggccgccgtctcagcggtcagcacgatatgttcggc
tcaggcagtgcgagcggaccggagaagctggtgctacccgcttaccaaccgtggcttgcg
tcggaaaaactgctgcgtgaatatcaggttctcggcttttacctgacggcgcatccgctc
gatacttaccgcgccgtgctggataagctgcgcgttcaaaacattgccgattttacagcc
gcggtaaagcagggcgccaccgcaggtcgtctggcgggtactgttactggaaagcaggag
cgtaaaacccgaaccggcaacaagatgggtatcgtgactttctccgatgcatccgggcag
tatgaggccgttctgttttcggaaggtctcggccagtaccgcgacctgctggaagtgggc
aagtcactcgtcatcaccgtgcaggcggaagagcgtcccgaaggcatcggcctgcgcatc
cagacggctgaatcgctggagcagcgctcagtgcagatgcagaaggcgcttcgtgtctat
ctgcgcgattccgggccgatgaagtcgcttgctcatcacctgaacaagggtgacggttcg
gtctatttcgtgctgatcaaagacgatgggcagcgcgagatcgaactcgaactgcccggt
aaatatcgtatatcgccggaaatcggcgcggccttccggtctgctgccggtgtcatcgat
gtcgagctaatctga
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