Agrobacterium vaccinii: HRR99_06860
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Entry
HRR99_06860 CDS
T08171
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
avq
Agrobacterium vaccinii
Pathway
avq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
avq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HRR99_06860 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avq03400
]
HRR99_06860 (uvrA)
DNA repair and recombination proteins [BR:
avq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HRR99_06860 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HRR99_06860 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
BCA_ABC_TP_C
AAA_29
DnaJ_CXXCXGXG
AAA_16
nSTAND1
RsgA_GTPase
AAA_33
AAA_21
Motif
Other DBs
NCBI-ProteinID:
UHS61253
LinkDB
All DBs
Position
circular:complement(1357847..1360768)
Genome browser
AA seq
973 aa
AA seq
DB search
MSELKTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESL
SAYARQFLEMMQKPDVDQIEGLSPAISIEQKTTSRNPRSTVGTVTEIYDYMRLLFARVGV
PYSPATGLPIESQTVSQMVDRILAFEEGKRLYILAPMIRGRKGEYKKELAELMKKGFQRV
KVDGQFYEIADVPALDKKYKHDIDVVVDRAVVRPDMAARLADSLETCLKLADGLAVAEFA
DKPLPPEETSAGGSANKSLNETHERVLFSEKFACPVSGFTISEIEPRLFSFNNPFGACPT
CDGLGSQQKVDIALIVPEPARTLKDGAVAPWAKSSSPYYNQTLEALGKAFGFKLSSRWND
LTDAAKKAILHGTDDKVEFEYQDGARSYKTVKNFEGIVPNLERRWKETDSAWAREEIERY
MSAAPCPACAGYRLKPEALAVKINKLHIGQVTEMSIRVARDWFEVLPESLNAKQNEIAVR
ILKEIRERLRFLNDVGLDYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIG
LHQRDNARLLETLKHLRDIGNTVIVVEHDEDAIMTADYVVDIGPAAGIHGGEVIAEGTPQ
QVMANPKSLTGKYLSGELGVAVPSERRKAKKGKEVKVVGARGNNLKNVTASVPLGVFTAV
TGVSGGGKSTFLIETLYKSAARRVMGAREIPAEHDRIDGFEFIDKVIDIDQSPIGRTPRS
NPATYTGAFTPIRDWFAGLPESKARGYAPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDV
YVTCDVCHGKRYNRETLDVTFKSKSIADVLDMTVEEGVEFFAAVPAVRDKLQSLFDVGLG
YIKVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEPTTGLHFHDVNKLLEMLHELV
NQGNSVVVIEHNLEVIKTADWVIDIGPEGGTGGGEIVATGTPEQIVKEKRSYTGHFLKEL
LERRSDRKIEAAE
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaattaaagacgatttcgatccgtggcgcccgcgagcacaacctcaaaggcatc
gatctggatttgccgcgcaacaagctgatcgtcatgactgggctgtcgggctccggcaaa
tcttctctcgcatttgacacgatctatgcggaggggcagcgtcgctacgtcgaaagcctt
tcggcctatgcccggcagtttctggaaatgatgcagaagcccgacgtggatcagatcgaa
ggtctgtcgccggccatttccatcgaacagaagacgacctcgcgcaacccgcgctcgacg
gtcggaactgtcacggaaatctatgactacatgcgcctactgtttgcgcgtgtcggcgtt
ccctattcgccagcgaccgggctgcccatcgaaagccagaccgtcagccagatggtcgac
cgcatcctcgcgttcgaggagggcaagcggctctatattcttgcgcccatgatcagaggt
cgtaaaggcgaatataaaaaagagctggccgaactgatgaagaagggcttccagcgcgta
aaggtggatggccaattctacgaaattgccgatgtcccggcgctggacaagaaatacaag
cacgatatcgatgtcgtcgtggaccgcgccgttgtgcggccagatatggcagcgcgtttg
gcggacagtctcgaaacctgcctgaaactcgcagacggtctggctgttgcagaatttgcc
gacaagcccctgccgccagaggaaacatcggcgggtggatcggccaataagtcgctcaac
gaaacccatgagcgggtgcttttctcggaaaagtttgcctgccccgtatcgggcttcacg
atctccgagatcgagccgcgcttgttttccttcaataatccgttcggtgcttgccccact
tgcgatggccttggctcgcagcagaaagtcgatattgcactcatcgtgccggagcctgcc
cgcacgttgaaagatggggccgtggcaccttgggcaaaatcatcgtcaccctattataat
caaacgctggaagcccttggcaaagccttcggtttcaagctttcgagccgctggaacgac
ctgacggatgccgcgaaaaaggccattcttcacggtactgacgacaaggtcgagttcgaa
tatcaggacggcgctcgctcctataagacggtcaagaacttcgaaggcatcgttccaaac
ctcgagcgccgctggaaagagactgatagcgcatgggcgcgtgaagagatcgaacgctac
atgtcggcagcaccctgcccggcctgcgccgggtatcgcctgaagccggaagccctggcg
gtgaagatcaacaagctgcacatcggccaggtcacggaaatgtcgatccgcgtagcacgc
gactggttcgaggttttgccggaatcgctcaatgccaaacagaatgagatcgccgttcgt
atcctgaaggaaatccgcgaacgcctgcgcttcctcaacgatgtcgggctggattatttg
agcctgtcgcgaaattccggcaccctgtccggtggtgagagccagcgtattcgcctcgcc
tcgcaaatcggctctggtctgacaggcgttctctacgttctcgacgagccatcgatcggc
ctgcaccagcgtgacaacgcacgtctgctggaaacgctgaaacatcttcgcgatatcggc
aacaccgtcatagttgtcgagcatgatgaagacgcgatcatgacggcggattacgttgtc
gatatcggtcccgccgctggtattcacggtggtgaggtgattgccgaaggtacgccgcag
caggtgatggccaacccgaaatcgctgaccggcaagtatctttccggcgaacttggcgtg
gcggttcccagtgagcgccgcaaggccaagaagggtaaggaagtcaaggtcgtcggtgca
cgcggcaacaatttgaagaatgtcaccgcctccgtcccgcttggcgtcttcactgcggtg
actggcgtttcgggcggcggaaagtcgacattcctgattgagacgctgtataaatccgcg
gcgcgacgcgtcatgggcgcacgcgaaattcccgccgaacatgaccgcatcgatggcttc
gaatttatcgacaaggtcatcgatatcgatcagtcacccatcggtcgcacaccgcgctcc
aacccggccacctacactggcgccttcacgccaatccgcgactggtttgctggattgccg
gaatccaaggcgcgtggttatgcgccgggccgcttctccttcaacgtaaagggtggtaga
tgcgaagcctgtcagggtgatggcgtcatcaagatcgagatgcacttcttgcctgacgtt
tacgtcacctgtgacgtttgccacggcaagcgctacaatcgtgaaacactcgatgtgact
ttcaagtccaaatccatcgccgacgttctggatatgacggtcgaagaaggtgtggagttc
ttcgcggctgtgcctgccgtgcgtgacaagctgcagtcgctattcgacgtcggacttggc
tacatcaaggttgggcagcaggccaacaccctgtcgggtggtgaagcgcagcgcgtgaag
ttggcgaaggagctatccaagcgttcaacgggccgcacgctctatattctcgacgagccg
acaaccggcctgcatttccacgacgtcaacaagctcttggaaatgctgcatgaactggtc
aatcagggcaactccgtcgtcgtcatcgaacataatctcgaagtcatcaagactgcggat
tgggttatcgatatcggtcccgaaggcggtaccggcggcggtgagatcgtggcaaccggc
acgccggaacagatcgtcaaggagaagcgctcctataccggtcatttcctgaaagaactg
ctggagcgtcgttccgaccgaaagattgaggcagcggagtaa
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