Agrobacterium vaccinii: HRR99_07505
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Entry
HRR99_07505 CDS
T08171
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
avq
Agrobacterium vaccinii
Pathway
avq02024
Quorum sensing
avq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HRR99_07505 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
HRR99_07505 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avq03019
]
HRR99_07505 (hfq)
03036 Chromosome and associated proteins [BR:
avq03036
]
HRR99_07505 (hfq)
Messenger RNA biogenesis [BR:
avq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
HRR99_07505 (hfq)
Chromosome and associated proteins [BR:
avq03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
HRR99_07505 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
Hfq_1
LSM
Motif
Other DBs
NCBI-ProteinID:
UHS61367
LinkDB
All DBs
Position
circular:complement(1495316..1495558)
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AA seq
80 aa
AA seq
DB search
MAERSQNLQDLFLNTVRKQKISLTIFLINGVKLTGVVTSFDNFCVLLRRDGHSQLVYKHA
ISTIMPGQPMQMFESEEGAA
NT seq
243 nt
NT seq
+upstream
nt +downstream
nt
atggcggaacgttctcaaaacctgcaagatctttttctcaataccgttcgcaaacaaaag
atttcgttgacgatttttttgatcaacggcgtaaaactgacgggcgttgttacatccttc
gacaatttctgtgttcttcttcgtcgtgacggtcattcccagcttgtttacaagcacgcg
atttccacgatcatgccgggccagccgatgcagatgttcgaatcggaagagggtgcagct
taa
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