Agrobacterium vaccinii: HRR99_08030
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Entry
HRR99_08030 CDS
T08171
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
avq
Agrobacterium vaccinii
Pathway
avq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HRR99_08030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avq03019
]
HRR99_08030
03009 Ribosome biogenesis [BR:
avq03009
]
HRR99_08030
Enzymes [BR:
avq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HRR99_08030
Messenger RNA biogenesis [BR:
avq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HRR99_08030
Ribosome biogenesis [BR:
avq03009
]
Prokaryotic type
rRNA processing factors
HRR99_08030
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
RhlB
zf-CCHC
Motif
Other DBs
NCBI-ProteinID:
UHS61464
LinkDB
All DBs
Position
circular:1598791..1601766
Genome browser
AA seq
991 aa
AA seq
DB search
MADKMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEDHRRNDDFESANDGPNEPSSASSLA
VDLSQIDQPDIGIVAAPEAADETSEVSEIVAEPVATEVEAAEAVAEEAPAEDEKPKKRVR
RPRTKKKTEADEASAEAAPSDDGSEDDGSKGGEMAAMVDTDTISEEVEGLGRRSNDDDDD
DDDDHHEKEVIESVGAEDAMEEVPDRVSRKPRKQYRIQEVIKRRQILLVQVAKEERGNKG
AALTTYLSLAGRYSVLMPNTARGGGISRKITQPTDRKRLKEIARDLEVPQGMGVILRTAG
ANRTRVEIKRDFEYLMRLWENVRTLTLNSTAPCLVYEEGSLIKRSIRDLYNKDISEIIVS
GEEGYREAKDFMKMLMPSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYLII
NQTEALVAIDVNSGRSTREHSIEETAVQTNLEAAEEVARQLRLRDLAGLVVIDFIDMEEK
RNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCSHCGGTGHV
RSESSIALHVLRGVEEYLLRNTTHNITVRCTPDTALYLLNHKRATIVDYEARFGVAIIIA
ADDSVGAQHFAIDRGEAVENPVKIESLIQMLPDFEEEEDDIIIEADEDEDEEEVVVKAEK
TEARQPQADAGEDGKRKRKRRRRRRGKGSQNGTEAQGESDDDTSSDDQDDDAEGESDDEA
STSTLETSDSTSGDEAKRKRRRRGKRGGRRNRDENGNIIEDNDEVEAVQAVEEGETTSAS
EVSEESAVIEAVAVEAAPAVVAEESEKPKKPRRTRKAKDKAGDTEAEPAAVAAVAVDVAE
PAPVETVAPPAVEAPVAEAPAPAPAPVEPAVATSDVSKEETTEEAAKPTRANRGDNVSSS
EPVVTSAAPEGGDTDPSKPRKGGWWQRRGFF
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaaatgcttatcgacgcctcccatgaagaggagacgcgggtagtcgttgtt
cggggaaatcggatcgaggaattcgatttcgaatctgaacataagaaacagatccgtggc
aacatctaccttgccaaggtaacaagggttgagccttctcttcaggctgctttcgtggat
tacggcggcaaccgccatggttttctcgcattcgcggaaatccatcccgattattaccag
attcccctggccgatagacaggctctgctgagagcggaagccgaagaccatcgccgcaat
gacgacttcgaatcggcaaacgatggtcccaacgagccatcctccgcgtcgtcgctcgcc
gtcgatctttcccagatcgaccagcctgatatcggtatcgtcgcagcacccgaagctgcc
gatgaaacgagcgaagtttccgagatcgtagcagaaccggttgcaaccgaagtcgaggct
gccgaggccgtggctgaagaagcaccagccgaagacgaaaagccgaagaagcgcgttcgt
cgtccccgcaccaagaaaaagaccgaagcagatgaagcgtctgctgaagcagccccttcg
gacgatggttccgaagatgatggcagcaagggcggcgaaatggctgccatggtcgatacc
gacacgatttcggaagaagtcgaaggtcttggccgtcgtagcaatgacgatgatgacgat
gatgacgatgaccaccacgaaaaggaagtcatcgaatccgtcggcgctgaagatgcgatg
gaagaagttccagaccgcgtttcgcgcaagccacggaagcagtaccgcattcaggaagtc
atcaagcgccgccagatccttctggttcaggttgccaaggaagaacgcggcaacaagggc
gctgctctgacgacctatctgtcgctcgcaggccgttactcggttctgatgccgaacacg
gcgcgtggtggcggtatttcccgcaagatcacccagccgacagaccgcaagcgcctaaag
gaaatcgcacgcgacctggaagtgccacagggcatgggcgttattttgcgtacagccggt
gcaaaccgcacgcgcgtcgagatcaagcgtgacttcgaatatctgatgcgcctgtgggaa
aacgtccgcacgctgacgctcaactccacggctccgtgcctcgtgtatgaagaaggatcg
ctcatcaagcgttcgatccgcgatctctacaacaaggacatcagcgagatcatcgtgtca
ggcgaagaaggctatcgtgaagcgaaagacttcatgaagatgctgatgccgagccatgcc
aaggtcgttcagccttaccgcgacattcacccgatcttctcgcgctccggcatcgaagca
cagctcgaccgcatgttgcagccgcaggttacgttgaagtccggtggctatctcatcatc
aaccagaccgaagcactggttgccatcgacgtgaactccggtcgttcgacccgcgaacat
tcgatcgaagaaactgccgtccagaccaacctggaagctgcagaagaagtggcacgccag
ctgcgcctgcgcgaccttgctggtctcgtcgtcatcgacttcatcgacatggaagagaag
cgcaacaaccgctccgtcgaaaagaagctcaaggattgcttgaagaacgaccgcgcccgc
attcaggtcggccgtatctcgcatttcggccttctggaaatgtcgcgtcagcgcattcgc
gcatcggttctggaatccacgacgcaggtctgctcgcactgcggcggtacgggccatgtg
cgctccgaatcctccatcgccctgcatgttttgcgcggcgtggaagaatatctgctgcgc
aacaccacccacaacatcacagttcgctgcacgccggatacggcgctctacctgctcaac
cacaagcgcgcgaccatcgtggattatgaagcccgcttcggcgtggcgatcatcatcgcc
gcagacgacagcgttggtgcacagcactttgccattgatcgtggtgaagccgttgagaat
ccggtcaagatcgaaagcctcatccagatgcttcctgatttcgaggaagaggaagatgac
atcatcatcgaagccgatgaggatgaagacgaggaagaagtcgtcgtaaaggctgaaaag
accgaagcacgtcagccacaggcagacgcgggcgaagatggcaagcgcaagcgcaagcgt
cgtcgtcgtcgtcggggcaagggcagccagaatggcaccgaggctcaaggcgagtcggat
gacgacacatcttccgacgatcaggacgatgatgccgaaggcgaatccgatgacgaggca
tccacctcgacactggaaaccagcgacagcacgtctggcgacgaagcaaagcgcaagcgc
cgccgtcgcggcaagcgtggcggacgccgcaatcgtgacgaaaacggcaacatcatcgaa
gacaatgatgaagttgaagccgtgcaggccgtagaagaaggcgaaaccacctctgcttcc
gaggtctcggaagaatctgctgtcatcgaagctgtcgctgtagaagcagcgcctgcggtt
gttgccgaagagtcggaaaagccgaagaagcctcgccggacccgtaaggcaaaggacaag
gctggcgacaccgaggctgaacctgcggcagttgctgcggtagctgttgatgttgctgaa
ccagcaccggtcgagactgttgcaccgccagcagtggaagcacccgttgccgaagcccct
gctccggcaccagcgcctgtagaacctgctgttgcaacatccgacgtttcgaaggaagaa
acgacggaagaggctgccaagccgacccgcgccaaccgcggtgacaacgtctcctcctcg
gagcccgtcgtcacctcggcagcacccgaaggtggcgacaccgacccatccaaaccccgc
aagggcggctggtggcaaagacgtggcttcttttaa
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