Agrobacterium vaccinii: HRR99_13135
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Entry
HRR99_13135 CDS
T08171
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
avq
Agrobacterium vaccinii
Pathway
avq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HRR99_13135 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avq03019
]
HRR99_13135 (recQ)
03400 DNA repair and recombination proteins [BR:
avq03400
]
HRR99_13135 (recQ)
Enzymes [BR:
avq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HRR99_13135 (recQ)
Messenger RNA biogenesis [BR:
avq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HRR99_13135 (recQ)
DNA repair and recombination proteins [BR:
avq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HRR99_13135 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
HRDC
DEAD
RecQ_Zn_bind
HHH
Cas3-like_C_2
ResIII
DUF7599
Motif
Other DBs
NCBI-ProteinID:
UHS62402
LinkDB
All DBs
Position
circular:2680723..2682531
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AA seq
602 aa
AA seq
DB search
MNTDPFHILKTIYGYDTFRGQQADIVQHVIAGNNAFVLMPTGGGKSLCYQIPALSRPGMG
LVVSPLIALMVDQVAALRQAGVRAEALNSNLQPDERRALWADVRAGKVAILYAAPETLLK
PDVLDALQDVSLSLIAIDEAHCLSQWGHDFRPPYRQLDMLTERFPNTPRMALTATADEPT
RAEILEHMRIDGKDAFIAGFDRPNIRYAIMEKDNPRSQVKRFLRDHQDESGIIYCLSKRK
TEETAEWLRSEGYDALSYHAGMAREDREANQTRFQHGESIIMVATIAFGMGIDKPDVRFV
VHIDLPSSIEAYYQETGRAGRDGLPSDVLMLYGSDDIALRNRFIEESDAPDQRKHMERQK
LDALLGLAETAGCRRQALLSYFGDTCEPCGNCDTCAEPPELFDGAIAAQKILSCIYRTGE
RFGQAYIISVLLGADEERITRFGHDQITTYGIGKEHDNRTWRAILRQLIAARLIEVDLAG
HGGLSISETGRQFLREKPMLMLRKPQAPRKTSRYRNANGRPTVSLPDEDAALFQALRERR
MEIARTQNLPPYVIFHDKTLIELAGARPTSRSEMAKVPGVGEAKLDRYGPAFLEVIANFE
SE
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
gtgaatactgatccattccatattctaaaaaccatctacggctacgatactttccgtggc
cagcaggcagacatcgtccagcatgtcatcgcgggcaacaacgccttcgtactgatgccg
acaggcggcggcaagtcgctctgctaccagattccagccctatcgcgccccggcatgggc
cttgtcgtttcgcctctcatcgcgctgatggtcgatcaggtggccgccctccgtcaggcg
ggcgtgagagccgaggcgctgaattccaaccttcagccggatgagcgccgcgccctgtgg
gccgatgttcgcgctggcaaggtcgccattctctatgctgcgccggaaacgctgctgaag
ccagacgtgctcgacgcgcttcaggatgtgtccctatcgctcattgccatcgacgaggcg
cactgcctgtcccaatggggccatgacttcaggccgccctaccgccagttggatatgctg
accgagcgcttccccaacacgccgcgcatggctttgacagcgacggcagacgagccgacc
cgcgccgaaattctggaacatatgcgtatcgacggcaaggacgccttcatcgcaggcttt
gaccggcccaatattcgctacgccattatggagaaggacaatccgcgatcgcaggtcaaa
cgcttcttgcgggatcatcaggatgaaagcggcatcatctactgcctgtccaagcgaaaa
acggaggagactgccgaatggctgcgctccgaaggctatgacgccctctcttaccacgcc
ggcatggcacgcgaagaccgtgaggcaaaccagacccgctttcagcatggcgagtccatc
atcatggtcgccaccatcgcgtttggcatgggcatcgacaagccggacgtccgcttcgtg
gtgcatatcgatctgcccagcagcatcgaagcctattatcaggaaacgggccgtgctggt
cgtgacggtctaccgtccgacgtgctgatgctctatggctccgacgacatcgcgttgcgc
aatcgcttcatcgaagaatccgatgcgccggaccagcgcaagcatatggaacggcaaaag
ctggatgctctgctgggcttggccgaaacggcgggatgccgcagacaggcactgctctcc
tatttcggagatacgtgcgagccctgtggcaactgcgacacctgcgccgaaccaccagaa
cttttcgacggcgccatcgccgcacaaaaaatcctgtcctgcatctacagaactggagag
cgcttcggtcaggcctacatcatcagcgtgctgttgggcgccgacgaggagcgcataacc
cgattcggtcatgaccagattaccacctatggcatcggcaaggagcacgataaccgcacg
tggcgagcaatcctgcgccagttgatcgcagctcggctgatcgaagtcgatctcgccggg
catggcggcctttcgatatcagaaacaggccgccagtttctgagagagaaacctatgctg
atgttgcgaaaacctcaggcgccgcgcaaaaccagccgctatcgcaatgcgaatggacga
ccaaccgtcagtcttcccgacgaggatgcggctttgttccaggccctgcgcgagcgccga
atggaaatcgcccgcacccagaacctcccgccgtacgtcatattccatgacaaaaccctg
atcgaacttgcaggcgcccgcccgacatcacgttcagagatggcaaaggtaccaggcgtt
ggcgaagcaaagctggatcgctacggccccgcctttctggaggtgatagcaaacttcgaa
tccgaataa
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