Agrobacterium vaccinii: HRR99_13280
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Entry
HRR99_13280 CDS
T08171
Symbol
thiC
Name
(GenBank) phosphomethylpyrimidine synthase ThiC
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
avq
Agrobacterium vaccinii
Pathway
avq00730
Thiamine metabolism
avq01100
Metabolic pathways
avq01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
avq00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
HRR99_13280 (thiC)
Enzymes [BR:
avq01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
HRR99_13280 (thiC)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-ProteinID:
UHS62424
LinkDB
All DBs
Position
circular:complement(2710670..2712493)
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AA seq
607 aa
AA seq
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MNIVAKTISPNVTTGPLPASTKVHKPGVLHPDIRVPMREIAVHPTAGEPPVTVYDSSGPY
TDPSHRLDIEGGLPRLRHDWVLARGDVVAYEGRHVKPEDNGFATGERLTPEFPVRNQPLR
AIDGKAVTQLAYARAGIITAEMEFVAIRENLGREALKGKMVRDGESFGAHIPDFVTPEFV
RQELAAGRAIIPANINHPEAEPMIIGRNFLVKINANIGNSAVTSSMAEEVEKMVWAIRWG
GDTVMDLSTGRNIHNIREWIIRNSPVPIGTVPLYQALEKVNGIAEDLTWEVFRDTLIEQA
EQGVDYFTIHAGVRLHYIPLTVNRVTGIVSRGGSIMAKWCLHHHKESFLYEHFEEICDIC
RAYDVSFSLGDGLRPGSIADANDAAQFAELETLGELTQIAWAKDCQVMIEGPGHVPMHKI
KENMDKQLKVCGEAPFYTLGPLTTDIAPGYDHITSGIGAAMIGWFGTAMLCYVTPKEHLG
LPDRDDVKVGVITYKIAAHAADLAKGHPAAQIRDNALSRARFEFRWEDQFNLSLDPETAR
SFHDETLPKEAHKVAHFCSMCGPKFCSMRISHDIRAEAQKEGLEAMAEKFKQGGELYLPL
AQPTPGE
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaacattgttgccaaaaccatctcgcccaacgtgaccaccggtccgctgcccgcctcc
actaaggtgcacaagccgggcgttcttcaccctgacattcgcgttcccatgcgcgaaatt
gccgtgcatccgaccgcaggcgaaccgcctgtcacggtgtacgattcctctggtccctac
accgatccaagtcaccgcctcgatatcgaaggcggcttgccgcgccttcgccatgactgg
gttctggcacgcggcgatgtcgtggcctatgagggccgacacgtcaaacccgaagacaac
ggctttgccacaggcgaacgtctcacgccggaatttcccgttcgaaaccagccgctgcgc
gcaatcgatggcaaggccgtcactcagctcgcctacgcgcgggcgggcatcattaccgcc
gaaatggaatttgtcgcgattcgcgaaaatctgggccgggaagccctcaaaggaaagatg
gtgcgcgatggcgagagcttcggcgctcacattcccgatttcgtcacgccggaattcgtg
cgccaagaattggcagcgggcagggccatcatcccggccaacatcaaccaccccgaggcc
gaaccgatgatcatcggtcggaactttctggtgaagatcaacgctaatatcggcaattct
gccgtcacctcttccatggcggaagaagtggagaaaatggtgtgggccatccgctggggc
ggagatacggtcatggacctgtcgaccgggcgcaacatccacaatatacgcgagtggatc
atccgcaattcgccggttcccatcggtacggtgccgctttatcaggcgctggaaaaggtg
aacggcattgccgaagacctgacttgggaggtgttccgcgatacgctgatcgagcaggcc
gagcagggcgtcgattacttcaccatccatgccggtgtgcgactgcattacataccgctc
accgtcaatcgcgtcacaggtatcgtctcgcgtggcggctcgatcatggccaagtggtgc
ctgcatcatcacaaggaatctttcctctacgagcatttcgaagaaatctgcgacatctgc
cgggcctatgacgtgtcgttttcgctgggcgatggcctgcgccccggttcgatcgccgat
gcaaacgacgccgcacagtttgccgagctggaaactctgggcgaactcacgcagatcgct
tgggctaaggattgccaagtcatgatcgaaggccccggccatgtgccgatgcacaagatc
aaggagaacatggacaagcagttgaaggtttgtggtgaagcacccttctatacgctgggg
ccgctgacgaccgatattgcccccggctatgaccatatcacctccggcataggggcggcc
atgatcggttggttcggtacggccatgctttgctacgtcacgccgaaggaacatctcggt
ctgccggatcgagacgacgtgaaggtgggtgtgattacctacaagatcgcggcgcatgcg
gccgatctcgccaagggccatccggcggcgcaaatccgcgacaatgccctgtcgcgtgcc
cgcttcgagttccgctgggaagaccagttcaacctgtcgctcgatcccgagacggcgcgg
tccttccatgacgagaccttgccgaaggaagcgcacaaggttgcccatttctgctccatg
tgcgggccgaaattctgttccatgcgcatttcgcacgacatccgcgccgaggctcagaag
gaaggactcgaggctatggccgagaaattcaagcaaggcggtgagctttatctgccgctt
gcgcaaccaacaccgggtgagtga
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