Agrobacterium vaccinii: HRR99_14510
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Entry
HRR99_14510 CDS
T08171
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
avq
Agrobacterium vaccinii
Brite
KEGG Orthology (KO) [BR:
avq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avq03032
]
HRR99_14510 (gyrB)
03400 DNA repair and recombination proteins [BR:
avq03400
]
HRR99_14510 (gyrB)
Enzymes [BR:
avq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
HRR99_14510 (gyrB)
DNA replication proteins [BR:
avq03032
]
Prokaryotic type
DNA Topoisomerases
HRR99_14510 (gyrB)
DNA repair and recombination proteins [BR:
avq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HRR99_14510 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
GyrB_insert
Toprim_4
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
UHS62654
LinkDB
All DBs
Position
circular:2998360..3000795
Genome browser
AA seq
811 aa
AA seq
DB search
MTETPSSENAASAAYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE
ALAGHADLVTVTLNADGSVSVTDNGRGIPTDIHTGEGVSAAEVIMTQLHAGGKFDQNSYK
VSGGLHGVGVSVVNALSVWLKLRIRRNGKIHEISFTHGVADGPLKIVGEYEGRSGTEVTF
LASTETFTMTEYTYATLEHRLRELAFLNSGVRILLTDKRHSDIKQEEMLYDGGLAAFVRY
LDRSKKPLVDKPVYIIGEKDGITVEVAMWWNDTYHENMLCFTNNIPQRDGGTHMAGFRGA
LTRQVTSYADSSGITKREKVSLQGEDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV
VENLVNEALSTWFEEHPTEAKILVGKVVEAAIAREAARKARELTRRKGALDISSLPGKLA
DCSERDPAKSEVFLVEGDSAGGSAKQGRSRETQAILPLRGKILNVERARFDKMLSSQEIG
TLITALGTSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLY
IAQPPLYKVTRGKSVQYLKDEKALEDYLISMGIEEASLTLGSGEVRVGQDLREVILDAVR
MRTLIDNLHSRYSRSIVEQAAIAGAMNPELSADASKAEATVAEVARRLDMIAEETERGWT
GEVLDDGGLRFWRMVRGVKEVSTLDMGLMGSADARHIDQLATRMGDIYKTPPVLQRKDGT
LTISGPRSLLDAIFAAGRKGLSMQRYKGLGEMNAEQLWETTLDANVRSLLQVKIPDATDA
DSLFARLMGDEVEPRRDFIQENALNVANLDI
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaactccgtcgagcgaaaacgccgccagtgcagcctatggagccgactcgatc
aaggtcttgaagggccttgacgcggtgcgcaaacgtcccggcatgtatatcggtgacacc
gacgatggttccggtctgcaccacatggtctacgaagtcgttgacaacgccatcgatgaa
gccttggccggtcatgccgacctggtgacggtgacgctgaatgccgatggttcggtatcg
gtgacagacaatggtcgcggcatcccgaccgatatccacaccggtgaaggcgtctcggct
gccgaagttatcatgacgcagctgcacgcgggcggtaagttcgaccagaactcctacaag
gtctccggcggtctgcacggcgtgggtgtttccgttgtgaacgctctgtctgtctggctg
aagctgcgcattcgccgcaacggcaaaatccacgagatttccttcacgcacggcgtggcc
gacggccctttgaagatcgtgggcgagtatgaaggtcgctccggcacggaagtcaccttc
ctcgccagcaccgaaaccttcaccatgacggaatacacctacgcgacgctggaacaccgg
ctgcgcgaacttgccttcctgaattcgggtgtgcgcattcttctgaccgacaagcgccac
tccgacatcaagcaggaagagatgctctatgatggcggtctggcggccttcgttcggtac
cttgatcgctccaagaagccgctggtcgacaagcctgtttacatcattggcgaaaaagac
ggaattaccgttgaagtcgctatgtggtggaacgacacctaccacgaaaacatgctctgc
tttaccaacaacatccctcagcgcgatggcggcacgcatatggccggtttccgtggtgcg
ttgacgcgccaggtgacctcctatgccgatagctccggtattaccaagcgcgaaaaggtt
tcccttcagggcgaagattgccgcgaaggtctgaccgctgttctctcggtcaaggttccc
gacccgaaattctcgtcccagaccaaagacaagctggtgtcgtccgaagtgcggcccgtt
gtcgaaaatctcgtcaacgaagcgctcagcacctggttcgaagaacatccgaccgaagcc
aaaatcctcgtcggcaaggtcgttgaagccgcgattgcgcgtgaagccgcccgcaaggcc
cgtgaactgacccgccgtaagggcgcactcgatatctcctccttgcccggcaagcttgcc
gattgctcggagcgtgatccggccaaatccgaagtcttcctcgtcgagggtgactctgcc
ggtggttctgcaaagcagggccgttcgcgtgaaacgcaggccattttgccattgcggggt
aagatcctgaacgtcgaacgcgcgcgtttcgacaagatgctgtcgagccaggaaatcggc
acgctgattacggcgctcggcacttccatcggcaaggacgagttcaacgccgacaagctg
cgttaccacaagatcatcatcatgaccgacgctgacgtcgacggcgcgcatattcgcacg
ctgctgttgacgttcttcttccgccagatgccggaactgatcgagcgcggccatctctat
atcgcccagccaccgctctacaaagtgacgcgcggcaagtccgttcagtatctgaaggac
gaaaaggcgctggaagattatctgatttcaatgggcatcgaggaagcctcgctgacattg
ggttccggcgaagtccgtgtcggccaggatttgcgtgaggtcattctcgatgcggtacgc
atgcgcacgctgatcgacaatctgcattcacgctacagccgctcgattgtcgagcaggca
gccatcgccggtgcgatgaaccctgaactgtcggctgatgccagcaaggctgaagccacc
gttgccgaggttgcgcgtcgtctggacatgatcgccgaagagaccgagcgcggctggacc
ggcgaagttcttgatgatggcggcctgcgcttctggcgaatggtgcgcggcgtgaaagaa
gtctccacgctggatatgggcctgatgggttcggcagatgcgcgacacatcgaccagctg
gccacccgcatgggtgacatctacaagacgccgccggtgctgcaacgcaaggacggtacg
ctgacgatttcaggcccccgctcgcttctcgatgccatctttgcagcaggccgcaagggc
ttgtcgatgcagcgttacaagggccttggtgaaatgaacgccgagcagctgtgggaaacc
acgctcgacgcaaacgtgcgctcgctgcttcaggtgaaaattcctgacgcaaccgatgcc
gacagcctgtttgcccgcctgatgggcgacgaggtcgagcctcgccgcgacttcatccag
gaaaacgcgctgaacgtcgccaatctcgacatctga
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