Aeromonas veronii B565: B565_1116
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Entry
B565_1116 CDS
T01462
Name
(GenBank) RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
avr
Aeromonas veronii B565
Pathway
avr02020
Two-component system
avr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
avr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
B565_1116
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
B565_1116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avr03021
]
B565_1116
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
avr02035
]
B565_1116
Transcription machinery [BR:
avr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
B565_1116
Bacterial motility proteins [BR:
avr02035
]
Flagellar system
Flagellar assembly proteins
Stator
B565_1116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_23
UPF0122
GerE
Phage_terminase
Motif
Other DBs
NCBI-ProteinID:
AEB49151
LinkDB
All DBs
Position
1231785..1232462
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AA seq
225 aa
AA seq
DB search
MLVERHAPLVKRIAQHLLARLPSSVLLDDLIQAGMIGLLEASRNFDGSKGASFETYAGIR
IRGAMLDEIRRGDWVPRSVHRNSRAIAEAIENVEQTHGRDARDTEVAAEMGVSIADYHAM
LQDVSCGKIIGIEDLGVSEDVIGHPDDAPSGSGFDELAAERFQIQLSEQIGRLPEREALV
LSLYYDEELNLREIGEVLNVSESRVSQIHSQAMHRLRARLRDWHL
NT seq
678 nt
NT seq
+upstream
nt +downstream
nt
gtgctggtggagcgtcatgctcccctggtcaagcgaattgcccagcatttgttggctcgc
ctgcccagcagtgtcttgctggatgacctgatccaggcaggtatgattgggctgcttgaa
gcctcccgcaattttgacggtagcaagggggccagcttcgagacgtatgccgggatccgc
atccgaggcgccatgctggatgagatccggcgtggtgactgggtaccccgctctgtgcat
cgcaacagtcgggctattgcagaagcgatcgagaatgtcgagcagacgcacggtcgtgac
gcgcgagataccgaggttgctgccgagatgggggtctccatcgctgattaccatgcgatg
ctgcaagacgtctcttgcggcaaaattatcggtatcgaggatctgggggtcagcgaggat
gtgatcggccaccccgatgatgccccttccggctcgggattcgatgaattggctgccgag
cgatttcagattcaattatccgagcaaattggtcgtctaccagagagagaagctttggtt
ctctctctttactacgatgaagagctgaatttgcgtgaaattggcgaggttttgaatgtc
agcgagtcgcgtgtgagccagatccacagtcaggcaatgcacagattgcgtgctcgtttg
agagattggcatctataa
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