Aeromonas veronii B565: B565_2226
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Entry
B565_2226 CDS
T01462
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
avr
Aeromonas veronii B565
Pathway
avr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
avr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B565_2226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avr03400
]
B565_2226
Enzymes [BR:
avr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B565_2226
DNA repair and recombination proteins [BR:
avr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B565_2226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AEB50261
LinkDB
All DBs
Position
2501852..2505325
Genome browser
AA seq
1157 aa
AA seq
DB search
MPMTLPALPAKAGQKITLGQLVGSSLSLIAARLTSEAKGPVLLITADTPSALRLEQELQY
LLADKQLADQSAPVLLFPDWETLPYDTFSPHQDIISQRLETLYKLPQMSKGVLIVPISTL
MLRCAPRVYLDKYSLMVKAGQRLNLQQLRGRLAEAGYVAVDQVLEHGEFAARGSLLDLFP
MGSSSPYRIDFFDDEVDSIRPFDPETQRSSEPVKTVSLLPAREYPTDEAAIELFRGQFRE
QFELSRAEGSVYQEVSKGRWPAGIEYYLPLFFNQTASLFDYLPEETLLLTVGDIYPAAQR
FWNDIGQRYEDRRWDNTRPLLPPAQLYLPVEQLFASLGQYGAVRLQEAATAGDAGQHDLP
ISALPDLQLDHSKEQPLLALNQFLQGFAGRTLFAVESEGRREVLGDLLARISLHPKEFPS
LDAFMASPDRHGLLVAPLERGFLWQEVGQDPLALITETELLGGKVRSKRAREKSKNLSSD
AVIRNLGELTQGQPVVHLDHGVGRYLGLETIDAGGLPTEFLTLEYAGGDKLFVPVTSLHL
ISRYTGSDNPPSHKLGGEAWSKARRKAAEKVRDVAAELLDVYAHRAARAGFAFKHDKEAY
RQFAASFPFEETDDQLNAINAVLGDMCQAKSMDRLVCGDVGFGKTEVAMRAAFVAVHGGK
QVAVLVPTTLLAQQHYDNFRDRFANWPVRVEVLSRFRSAKEQSAVMKELAEGKVDIIIGT
HKLLGSELTFKDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGM
RDLSIIATPPAKRLAIKTFVRQHEPAVVREAVLRELKRGGQVYYLHNDVESIEKCAADLA
ELVPEARIGIAHGQMRERDLERIMSDFYHQRFNLLVCTTIIETGIDVPSANTIIMDRADH
LGLAQLHQLRGRVGRSHHQAYAYLLTPHPKLMTKDAAKRLEAIASLEDLGAGFALATHDL
EIRGAGELLGDDQSGQIESVGFTLYMEMLEQAVEALKNGKEPSLEQLMSQHTEVELRLPA
LLPDDYIPDVNMRLSMYKRIASAADEQELRELKVELIDRFGLLPEATKTLLELAAFRQRA
TALGIRRVEMSERGGYLDFTQETKVNPAYLVKLLSSQPRVYKMDGPTRLRFQVPTQDRAM
RLKLVDGLLADLANNSL
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgccaatgacactccccgccttgcccgccaaagcgggccaaaagatcacgctcggccag
ctggtcggcagcagcctctcgctgattgcagcccgtctcaccagtgaagccaaggggccg
gtactgcttatcaccgccgataccccgagcgccctgcgcctggagcaggagcttcagtat
ttgctggcagacaagcagctagccgatcagtccgcccccgtattgctgttccccgattgg
gagaccctgccctacgacaccttctctcctcatcaggacatcatttcccagcggctcgag
actctctacaagctgccgcagatgagcaagggggtattgattgtccccatctccaccctg
atgttgcgctgcgccccccgggtctatctcgacaaatacagcctgatggtgaaggccggc
cagcgcctcaatctgcaacagctgcgcgggcggctggccgaggcgggttacgtggcggtg
gatcaggtgctggaacatggcgaatttgccgcccgcggctccctgctcgatctcttcccc
atgggcagtagcagcccctatcgcatcgacttcttcgacgatgaagtggactccatccgc
ccgttcgatcccgaaacccagcgctccagcgaaccggtcaagacggtcagcctgctgccc
gcccgggaataccctaccgacgaggcagcaatcgaactgtttcgcggccagttccgcgag
cagttcgagctgtcgcgggccgagggttccgtctatcaggaggtgagcaagggacgctgg
cccgccggcatcgagtattatctgccgctcttcttcaaccagaccgccagcctgtttgac
tacctgccggaagagaccctgctgctcaccgtgggggatatctaccccgccgcccagcgc
ttctggaacgacatcggccagcgctatgaagacagacgctgggacaacacccgcccactg
ctgcccccggcccagctctatctgccggtggagcagctctttgcctccctcggccaatat
ggcgcggtgcggctgcaagaggccgccaccgccggtgatgccggtcagcacgatctgccc
atctccgcgctgcccgatctgcaactcgatcacagcaaggagcaacctctgctggcgctt
aaccagttcctgcaaggctttgccgggcgcaccctgtttgcggtggaatccgaagggcga
cgggaggtgctcggcgatctgctggcgcgtatctcgctgcaccccaaagagttcccctcc
ctcgacgcctttatggcgagcccggatcgccacggcctcttggttgcaccgcttgaacgt
ggcttcctgtggcaggaggtcggtcaggatccactggcgctgatcaccgagaccgaactg
ctgggcggcaaagtgcgcagcaagcgggcgcgggagaagagcaaaaacttaagctccgat
gcggtgatcagaaacctgggcgagctgacccagggtcagccggtggtccatctggatcac
ggggtcggccgctatctgggactggaaaccatcgatgccggtggcctgcccaccgagttt
ttgaccctcgaatatgccggcggcgacaagctgttcgtgccggtcaccagtttgcacctt
atcagccgctacaccggttctgataacccgcccagccacaagctcggcggcgaagcctgg
agcaaggcgcggcgcaaggcggcggagaaggtgcgcgacgtggcagccgagttgctcgat
gtctatgcccaccgcgccgctcgcgccgggtttgccttcaagcacgacaaagaggcctat
cgccagtttgccgccagcttcccgttcgaggagaccgacgatcagctcaacgccatcaat
gcggtgctgggggacatgtgtcaggccaagagcatggaccgactggtgtgcggcgacgtc
ggtttcggcaaaaccgaagtggctatgcgggcggcgtttgtggccgtgcatggcggcaaa
caggtcgctgtgctggtgcccaccaccctgctggcgcaacagcactacgacaacttccgc
gaccgcttcgccaactggccggtgcgggtcgaggtgctgagccgcttccgctccgccaag
gagcagagcgctgtgatgaaggaattggccgaaggcaaggtggatatcatcatcggcacc
cacaagctgctcggctccgaactcaccttcaaggatctgggactgctcatcgtcgatgag
gagcacagattcggggtgcgccaaaaggagaagatcaaggcactgcgggccgatgtggat
atcctcaccctcaccgccactcccattccgcgcaccctcaatatggcgatgtccggcatg
cgggatctctccatcatcgccaccccacccgccaaacgactcgccatcaagaccttcgtg
cgccagcacgaaccggcggtagtgcgcgaggcggtgctgcgtgaactcaaacgtggcggc
caggtctactacctgcacaacgacgtcgagagcatcgagaagtgcgccgccgatctggcg
gaactggtacccgaggcccgcatcggcatcgcccacggccagatgcgcgagcgcgacctt
gagcggatcatgtccgacttctaccaccagcgcttcaacctgctggtttgcaccaccatt
atcgagaccggtatcgacgttccgagcgccaacaccatcatcatggatcgggcggatcac
ctaggattggcccagctgcaccagctgcggggccgggttggccgctcccaccatcaggcc
tacgcctacctgctcaccccccatcccaagctgatgaccaaggatgcggccaagcggctg
gaggcgattgcctcgctggaagatctcggtgccggttttgcgctggcgacccacgatctg
gagatccgtggcgcgggcgaactgctcggcgatgatcagagcggccagatcgaatcggtc
ggcttcaccctctacatggagatgctggagcaggcggtcgaggcgctgaaaaatggcaaa
gagccatcgctggagcaactgatgagccagcacaccgaggtggagctgcgcctgcctgcg
ctgctgccggatgactacatcccggacgtcaatatgcgcctctccatgtacaagcggatc
gccagcgcggcggacgaacaggagctacgggagctgaaagtggagctgatcgaccgcttt
ggtctcttgccggaggcaaccaaaaccctgctggagctggccgctttccgccagcgtgcc
accgcccttggcattcgccgggtggagatgagcgagcgtggcggctatctcgacttcacc
caggagaccaaggtcaatccggcctatctggtcaagctgctctccagccagccaagggtc
tacaagatggacgggccgacccggttgcgtttccaggtaccgacccaggatcgcgccatg
cgcctgaaactggtggatggtttgctggctgatctggccaacaacagcctgtga
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