Aeromonas veronii B565: B565_3040
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Entry
B565_3040 CDS
T01462
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
avr
Aeromonas veronii B565
Pathway
avr03030
DNA replication
avr03430
Mismatch repair
avr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
avr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B565_3040
03430 Mismatch repair
B565_3040
03440 Homologous recombination
B565_3040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avr03032
]
B565_3040
03400 DNA repair and recombination proteins [BR:
avr03400
]
B565_3040
Enzymes [BR:
avr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
B565_3040
DNA replication proteins [BR:
avr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
B565_3040
DNA repair and recombination proteins [BR:
avr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
B565_3040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AEB51075
LinkDB
All DBs
Position
complement(3437233..3440712)
Genome browser
AA seq
1159 aa
AA seq
DB search
MADPRFIHLRVHSDFSMVDGLQKINPIVGAAAANNMPALALTDQMNMCGLVRFYGAAHGK
GIKPIVGADFWVQSDELGDEQFRLTLLAMDNDGYQNITLLISRGYQRGHVQGRPVIDKSW
LAEHAKGVIVLSGGREGDVGKFLLKGNRQMTEQCVAFYQTHFPDAYYLELLRTGRPDEEV
YLHMAVAIATEFALPVVATNEVVFLNADDFDAHEIRVAIHDGYTLMDKRRPRRYSPQQYL
RSQEEMAELFADIPEALENTVEIAKRCNVTVRLGEYFLPNFPTGDMTTEDFLVAKSKEGL
EERLEFLFPDPQVRAERRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIEHVSD
MYGRDAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLIPPDPGMTLAKAFEAEPK
LPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKITDFAPLYCDDEGHHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKPPVDIAAIPIDDKKSFDLL
QRYETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGNEA
ISYPDEKWQHESLKPILEPTYGIILYQEQVMQIAQTLAGYTLGGADMLRRAMGKKKPEEM
AKQRAGFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPA
EFMAAVMTADMDNTDKIVTLVDECQRMGLTVIPPDVNTGRYRFSVNEDGHIVYGIGAVKG
VGEGPIDAILSARDQDGPFRDLFDFCNRVDIKKLNKRVMEKLILSGAMDRLGPHRAALMA
TLEEAMRAAEQHAKAQAVGQVDMFGVLTEEIDDVKKAFANVPHWPDKVWLEGERETLGLY
LTGHPINQYSSELRRYTSGRLCDLHPTSRDTVTTAAGLVIAARSMVTKRGNKMGIFTLDD
RSGRLDVTLFSEALEKYEELMQKDRILVVSGQVSFDDFSGGLKMSARELLDINDARERFA
RAIRISLDEQRIDDRFFPRLCEILEPARAGVCPVQVNYRRPGSRVRLTLGTEWRVTPTDQ
LIDDLRVLLGRERVELVFD
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggctgacccccgttttatccacctgcgagtccactccgacttctccatggtcgatggc
ctgcagaagatcaatcccatcgtcggggcggcggcggccaacaacatgccggcgctggcg
ctgaccgatcagatgaacatgtgtggtctggtgcgcttctatggagcggcccacggcaag
gggatcaagcccatcgtcggtgccgacttctgggtgcagagcgatgagctcggcgacgag
cagttccgcctcaccctgctagccatggataacgacggctaccagaacatcaccctgctt
atctcccgcggttaccagcgcggccacgtgcaggggcggccggttatcgacaagagctgg
ctcgccgaacacgccaagggggtgatcgtcctctccggcgggcgcgagggggatgtgggc
aagttcctgctcaagggcaaccggcagatgaccgagcagtgtgtcgccttctatcagacc
cacttccccgatgcctactacctcgaactgctgcgtaccggtcgacccgacgaagaggtc
tacctgcacatggcggtggcgattgccaccgagttcgcgctgccggtggtcgccaccaac
gaggtggtgttcctcaacgccgatgatttcgacgcccacgaaatccgggtcgccatccac
gatggctataccctgatggacaagcgccgcccccgtcgctacagcccccagcagtacctg
cgcagtcaggaggagatggcggagctgtttgccgatatccccgaagcgctggaaaacacg
gtggagatcgccaagcgctgcaacgtgacggtgcgtcttggcgagtacttcctgcccaac
ttcccgaccggcgacatgaccacagaagattttctggtggccaaatcgaaagagggtctg
gaggagcgtctcgagttcctgttcccggatccgcaagtgcgggccgagcgtcgtcccgag
tatgacgagcgtctcgacatcgagctgaaagtgattaaccagatgggcttcccgggttac
ttcctcatcgtgatggagtttatccagtggtccaaggacaacggcattcccgttggccct
ggccggggctcgggggcgggctctctggtggcctacgccctcaagatcactgacctcgac
ccgctggaatttgacctgctgttcgaacgtttcctgaaccccgagcgggtatccatgccc
gacttcgacgtcgacttctgcatggaccgacgcgacgaggtgatcgagcacgtctccgac
atgtatggccgggatgcggtctcccagatcatcaccttcggtagcatggcggccaaggcg
gtggtgcgggatgtgggccgggtgctgggccatgcctacggctttgtggatcgcatctcc
aagctgatcccgccggatccgggcatgacgctggccaaggcatttgaggccgagcccaag
ctgcccgagctctacgagcaggatgaggaggtcaaagacctcatcgacatggcccgccgc
ctggaaggggtggtgcgcaacgccggtaaacatgccggtggcgtggtgatcgcacccacc
aagatcaccgactttgcgccgctctactgcgatgacgaaggccatcacccggtcacccag
ttcgacaagaacgacgtggaatacgccggcctggtgaagttcgacttcctgggtctgcgc
accctcaccatcatcgactgggcgctcggcatgataaacccgcgtcttgccaaagagggc
aagccgccggtcgatatcgccgccatccccatcgatgacaagaagtcgtttgacctgttg
cagcgctacgagaccaccgcggtattccagctggaatcccgcggcatgaaggatctcatc
aagcggctgcgccccgactgcttcgaagacatgatcgcactggtggccctgttccgaccg
ggcccgctccagtcaggcatggtggataacttcatcgaccgcaagcacggtaatgaagcg
atctcctatccggacgagaagtggcagcacgagagcctgaaaccgattctggaaccgacc
tacggcatcatcctctatcaggagcaggtgatgcagatcgcccagaccctggctggctac
acgctcggtggcgcagacatgctgcgccgggcgatgggtaagaaaaagcccgaggagatg
gccaagcagcgagccggtttcgaggagggcgccgtcaaaaatggcgtcgacggcgaactg
gcgatgaagatcttcgatctggtggagaagtttgcgggctacggcttcaacaaatcccac
tccgccgcctatgcgttggtctcctaccagaccctctggctcaagacccacttcccggcc
gagttcatggcggcggttatgaccgccgatatggacaacaccgacaagatcgtgactctg
gtggacgagtgtcagcggatggggctcaccgtgatcccgccggatgtgaacactggccgc
tatcgcttctcggtcaacgaagatggccatatcgtctacgggatcggggcggtgaaaggg
gtgggtgaaggccccatcgatgcgatcttgagcgcacgggatcaggacggcccattccgc
gatctgttcgacttctgcaaccgggtcgacatcaagaagctcaacaagcgggtgatggag
aagctgatcctctccggcgccatggatcggctcggcccccaccgcgccgccctgatggcg
accctggaggaggcgatgcgggccgccgagcagcacgccaaggcgcaggcggtggggcag
gtcgacatgttcggcgtgctcactgaagagattgacgacgtcaaaaaggcgtttgccaac
gtgccgcactggcctgacaaggtgtggctggaaggggaacgcgagaccctcgggctctat
ctcaccggccaccccatcaaccagtacagcagcgaattgcgtcgctatacctcgggtcgc
ctgtgcgatctgcatcccacctcccgcgataccgtaaccacggcggctgggctggtgatc
gcggcccgcagcatggtgaccaagcgtggcaacaagatggggatcttcactctggacgac
cgttccggtcgcctcgatgtgaccctgttcagtgaagcgctggaaaaatatgaagaattg
atgcaaaaagaccgcattttggtggtttctggacaggtcagctttgatgacttctccggt
ggccttaaaatgtcggctcgagaattactggatatcaacgatgcgagggagcgttttgcc
agagcaatccgcatctccctcgatgaacagcggattgatgatcgctttttcccgcgtttg
tgcgagattttggagcccgcccgtgccggagtctgtccggttcaggtaaactatcgtcgc
cccggctcccgggtgcgattgacgctcggtaccgagtggcgggtgacgcccaccgatcaa
ctgatagatgacttgcgagtcctgcttggacgagagcgggttgaattggtttttgattag
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