Aerococcus viridans: AWM76_04825
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Entry
AWM76_04825 CDS
T04270
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
avs
Aerococcus viridans
Pathway
avs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWM76_04825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avs03019
]
AWM76_04825
03016 Transfer RNA biogenesis [BR:
avs03016
]
AWM76_04825
Enzymes [BR:
avs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AWM76_04825
Messenger RNA biogenesis [BR:
avs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AWM76_04825
Transfer RNA biogenesis [BR:
avs03016
]
Prokaryotic type
tRNA degradation factors
AWM76_04825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
S1_RRP5
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AMC00916
UniProt:
A0AAU8U4F0
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All DBs
Position
1004009..1006525
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AA seq
838 aa
AA seq
DB search
MSRKINYMKKEILAELASSEENYTAQTLSQALSYDQADDFADLVKTLAKLEQAGDIAITS
NGTLSIKQDKATYTGVFTQNARGFGFVKTDELEKDIFIGKGKTNGALQSDEVRVKITREA
LPVNDKSAEGEIAEVLVRHTTRLTGEFTPFNDNDKASTGFIGSVKPQNHGLDNLTALVRP
DGLHPVEGEIVVVEIVDYPDDQHPFAVAGNVIQQIGHKDEPGVDILAILNMFEIPHEFPN
EVLDHANEVPETISNDDLKGRKDHRDLLTITIDGADAKDLDDAISLSKLPNGNYQLGVHI
ADVSYYVTEDSAMDKEAYERGTSVYLTDRVVPMLPQRLSNGICSLHPNVDRLTMTAIMEI
DHNGGIVDYDIHPSIIHSDYRMTYSDVNAIITDNDSELREKYSEITDMLENMATLHEILY
NKRVSRGAIDFDSSEAKIIVDGEGHPTAIEVRERGVGERMIESFMLSANETVAGHFTRKV
LPFIYRVHEQPDEDRMQRFLEFVTAFGIVPQGTKSSIRPKDIQNVLREVEGETFQPVVSM
MLLRSMKQAKYDIEPIGHYGLAAEDYTHFTSPIRRYPDLIVHRLIHFYESHARPNADKQE
KMKMKLSDIAEHSSKMERRSVDAERETDSLKKTEFMLDKIGMEFEGIISSVTGFGLFVEL
PNTVEGLVHISMLKDDYYNFVDSQLVLIGENTGKTYRIGDRVTVKVMDVNTDTRDIDFVI
VKSEDNGESTSLQRQDNRKGGRGNNKGRKGNNRSRRRQQDKESNGGNRRNDQSGASKSHK
ENKNKHTGKPGQKGKKSGSKPQNGKAGGQGQNNKQNSNSKSKKSNQKRRFVIRQSKRK
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
gtgagtagaaaaattaattatatgaaaaaagaaatccttgccgagttggcgagttcagaa
gaaaattacacagcacaaactttaagccaagccttgtcttatgaccaagcagatgatttt
gccgatttggtgaaaactctcgctaaattagagcaagctggtgacattgccattacaagc
aacggtaccttaagtatcaaacaagacaaagccacatatacaggggtatttactcagaat
gcacgtggatttggtttcgtcaaaactgatgaacttgaaaaagacattttcatcggtaaa
ggcaaaaccaatggtgccttgcaaagtgatgaagtgcgggtgaaaatcactagagaagct
cttcctgtcaatgacaagtcagctgaaggtgaaattgctgaagtattagtccgtcataca
acacgccttacaggtgagtttacgccctttaatgataatgataaagcgtcaacaggtttt
atcggtagcgtgaaaccgcaaaaccatggtttagacaatttaaccgccttagtaagacca
gatggcttacacccagtagagggtgaaattgttgttgtcgaaatagtggattatccagat
gaccaacacccatttgcagttgcaggtaacgtcatacaacaaatcggtcataaagatgag
ccgggtgtagatatccttgccattttaaacatgtttgaaattccgcatgaattccctaat
gaagttttagatcatgccaatgaagtgcctgaaaccatctcaaatgatgacttaaaagga
cgtaaggaccaccgtgacctgttgactattacaattgatggggcagatgcaaaagacttg
gatgatgccatctcattaagtaaattgccaaatggaaactatcaattaggcgtccatatt
gctgacgtgtcttattatgtgacagaagattcagcaatggataaagaagcctatgaacgt
gggacgtcagtttatctaacagatcgcgtagtcccaatgttaccgcaacgtttatctaat
ggtatatgttcattacatccaaatgtggaccgtttaacaatgacagctatcatggaaatt
gaccacaacggcggtattgttgattatgatattcatccgtcaattatccactcagattac
cgaatgacttattcagatgtaaatgccattatcacagataatgattcagaattacgggaa
aaatacagtgaaatcactgacatgttagaaaatatggcaaccttacatgagattttatac
aataaacgtgttagtcgtggtgccattgactttgactctagtgaagctaaaattatagtt
gatggtgaaggtcatcctactgcgattgaagtacgtgaacgtggcgttggggagcggatg
attgaatcattcatgttatcagccaacgagactgtagctggccactttacaagaaaagta
ttgccatttatctaccgtgtccatgagcaaccggatgaagacagaatgcagcgtttctta
gaatttgtgacggcctttggtattgtgccacaagggacaaaatcttctatccgtccaaaa
gatattcaaaatgtcttgcgcgaggttgaaggggagactttccaaccggttgtatccatg
atgttactgcgttcgatgaaacaagcaaaatatgatattgaaccaatcggccattatggt
ttggcggctgaagattacacccacttcacatcaccaatccgtcgttacccagacttgatt
gttcaccgtttaattcacttctatgaaagtcatgcacgtccaaatgcagacaaacaagag
aaaatgaagatgaaattatctgacatcgcagaacattcttctaagatggaacgtcgtagt
gtggatgctgaacgtgaaacagatagtttgaagaaaacagaatttatgttggataaaatt
ggcatggaatttgaaggaatcatttcgtcggttactggttttggtttattcgttgaatta
ccaaatacagttgaaggtttagtccatatttctatgctaaaagacgattactacaacttt
gtagatagccagttagtgttgattggggagaatactggaaaaacttaccgtattggggac
agagtgactgttaaagtgatggatgttaacacagatacacgtgacatcgattttgtcatt
gtgaagagcgaagataacggtgaatcaactagtttacagcgtcaagataaccgtaaaggt
ggacgtggcaataataaaggccgtaaaggcaacaatagaagccgtagacgccaacaagat
aaagaatcaaatggtggcaaccgccgaaatgaccaatctggtgctagcaagtctcataag
gagaataagaacaagcacacaggtaaacctggtcagaagggtaagaagtccggtagcaag
ccacagaacggcaaagctggcggtcaaggacaaaataataagcaaaatagcaatagtaag
agtaaaaaatcaaatcagaaacggcgctttgtcattcgtcaaagtaaacgcaaataa
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