Avibacterium volantium: NCTC3438_00217
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Entry
NCTC3438_00217 CDS
T06626
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
avt
Avibacterium volantium
Pathway
avt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC3438_00217 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avt03019
]
NCTC3438_00217 (deaD)
03009 Ribosome biogenesis [BR:
avt03009
]
NCTC3438_00217 (deaD)
Enzymes [BR:
avt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC3438_00217 (deaD)
Messenger RNA biogenesis [BR:
avt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC3438_00217 (deaD)
Ribosome biogenesis [BR:
avt03009
]
Prokaryotic type
rRNA helicases
NCTC3438_00217 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
SidE_PDE
AAA_22
Motif
Other DBs
NCBI-ProteinID:
VEB22005
UniProt:
A0A3S4HRQ2
LinkDB
All DBs
Position
1:complement(216714..218528)
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AA seq
604 aa
AA seq
DB search
MTETKITFNDLGLPEFILNAVTDMGFESPSPIQQACIPHLLAGDDVLGMAQTGSGKTAAF
SLPLLAQIEPNKKMPQMLVMAPTRELAIQVADACEQFMKYAKGINIVTLYGGQRYDIQLR
ALKQGAQVVVGTPGRILDHLRRNTLDLSELKAIVLDEADEMLRMGFIEDVETVMAALPEQ
HQTALFSATMPEPIRRITKRFMHDPKEVKIQSTQRTAPDITQSCWYVHGFRKNEALLRFL
EVEDFDAAIIFARTKTATLDITELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILV
ATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRAGRALLFVEPRENRLLKNI
ERLTKKPIEEVEIPNHEALQACRRKKFVAQITKQLEHHDLEQYRSLLEDLFTADQDQEDI
AAAMLMLLQGKQKLILPLDPIVDKRARRDRGSRKENPRSAERRGYGNPQPMDLYRIEVGR
LDGVEVRHIVGAIANEGDINSRYIGHIKLYDNHSTIELPQGMPKELLNHFAKTRVMNKQM
QMSFLGEAKGGEGKGKEKNFGGKGRGRADDRFARGKGDRKFKEKNHRSFDEGGFKSRSRK
RSFS
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaacaaaaatcacctttaatgatttaggtttacctgaatttatccttaatgct
gtaactgatatgggatttgaatccccttcgccaatccaacaagcttgtattccccacctt
ctcgcaggtgatgatgtacttggaatggcgcaaacaggaagtggaaaaaccgctgccttt
tctctccctttattagcccaaattgagccaaataaaaaaatgccacaaatgctagttatg
gcgcccactcgtgagcttgccattcaagtggctgatgcgtgcgaacaatttatgaaatat
gccaaagggatcaacatcgttaccctttacggcggacaacgttatgacattcaactgcgt
gccttaaaacaaggggcgcaagtggtcgtgggaacaccgggacgtattttagatcacctt
agacgcaacacccttgatctttctgaattaaaagccatcgtgttagacgaagccgatgaa
atgctgcgtatgggctttattgaagatgttgaaaccgttatggcagcattgccagaacag
caccaaaccgcgcttttctctgccacaatgccagaaccgattcgccgcattaccaagcgc
tttatgcacgatccaaaagaagtcaaaatccaatcaacacaacgcactgcgcctgatatt
acgcaaagctgctggtatgtacacggatttcgtaaaaacgaagccttattacgcttcctt
gaagtggaagattttgacgccgcaatcatttttgcacgcaccaaaaccgccacccttgat
attactgaattgctagaaaaacacggtttccgtgccgccgctctcaatggtgatatgacg
caacaactgcgtgaacaaaccttggatcgcctgcgtaatggtagcctagatattttagtg
gctaccgatgttgctgcacgcggacttgacgtggaacgtatcagccttgtagtgaactac
gatattccacttgacgcagaaagctatgttcaccgtatcggacgaactggacgcgcaggc
cgtgcaggacgtgctttactctttgttgaaccaagagaaaaccgcctactaaaaaacatt
gaacgcttaactaaaaagccgattgaagaagtcgaaattccaaatcacgaagcgttacag
gcttgccgccgtaaaaaattcgtggcgcaaatcaccaaacagctggaacatcacgatcta
gaacaatatcgtagcttgttagaagatctgtttaccgccgatcaggatcaagaagatatt
gctgctgcaatgttaatgctcttacaaggcaaacaaaaattaattcttccgctagatcct
atcgtagataaacgcgcacgccgtgatcgtggcagccgtaaagagaacccacgttccgct
gaacgccgtggctacggtaacccgcaaccaatggacttataccgtattgaagtggggcgc
ttagatggcgtggaagtgcgtcatatcgttggcgccattgctaacgaaggggatattaat
agccgttacattggacatatcaaactttacgataaccattccaccattgaattaccacaa
ggaatgccaaaagaattgctcaaccatttcgccaaaacgcgcgtaatgaacaaacaaatg
caaatgtctttccttggtgaagccaaaggtggcgaaggcaaaggaaaagaaaaaaacttt
ggcggaaaaggccgtggacgcgctgatgatcgctttgcccgtggcaaaggggatcgcaaa
tttaaagaaaaaaaccaccgctcttttgacgaaggtggctttaaatcgcgctcaagaaaa
agatcgttctcttag
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