Avibacterium volantium: NCTC3438_00309
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Entry
NCTC3438_00309 CDS
T06626
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
avt
Avibacterium volantium
Brite
KEGG Orthology (KO) [BR:
avt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
avt03009
]
NCTC3438_00309 (srmB)
Enzymes [BR:
avt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC3438_00309 (srmB)
Ribosome biogenesis [BR:
avt03009
]
Prokaryotic type
rRNA helicases
NCTC3438_00309 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
DUF6930
Cas3-like_C_2
Helicase_RecD
Terminase_6N
AAA_22
HypF_C_2
WSD
AAA_11
Motif
Other DBs
NCBI-ProteinID:
VEB22168
UniProt:
A0A3S4HRU6
LinkDB
All DBs
Position
1:complement(299869..301188)
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AA seq
439 aa
AA seq
DB search
MNLAQFEELDLAPELLKALAKKGYQRPTAIQLESIPAAMAERDVLGSAPTGTGKTAAFLL
PALQHLLDNPRRKPGTPRVLVLTPTRELAMQVAEQAEQLAQFTNLDITTITGGVAYQNHG
EVFNSNQDLVVATPGRLLQYIQEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRW
RKQTLLFSATLEGELLMDFAGRLLNDPVQIDAEPSRRERKKIQQWYYHADSDEHKVKLLA
RFIEQEKVSKGIIFVRRRETVRELSDILRKRGIRSTYLEGEMAQTQRNNAIDKLKNGVVT
VLVATDVAARGIDIDDISHVMNMDLPYSADTYLHRIGRTARAGKKGVAVSFVEAHDYKLL
GKIKRYTEELLKPRIIEGLEPRTKAPKDGEIKSVSKKQKARIKQKRAEKKKSEQQKKTKL
RHKDTKNIGKRRKPSGGEG
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgaacttagcacaatttgaagaattggatctcgccccagaattattaaaagccttagcg
aaaaaaggctaccaacgccccaccgccattcagttggaaagcattccagcggcaatggcg
gagcgagatgtgctaggctcagccccaacaggtacggggaaaaccgccgctttcttattg
cccgccttgcaacatttgctagataatccacgccgcaaacctggtacgccaagggtgttg
gttctcaccccgacccgtgagttagccatgcaagtggcagagcaagcggagcaattagcg
caatttaccaaccttgatattactaccatcacgggcggtgtagcctatcaaaaccacggt
gaagtgtttaacagcaaccaagatttagtggtcgccacgccggggcgtttgctgcaatat
atccaagaagaaaattttgattgtcgcgcggtagaaattctgatttttgacgaagcggat
cgtatgctgcaaatgggctttgggcaagatgcggaaaaaatcgctgccgaaacgcgctgg
cgtaaacagaccttgctgttttctgccacattggaaggggaattgctaatggattttgca
gggcgattactcaatgaccctgtgcaaattgatgcagagccaagtcgccgtgagcgtaaa
aaaatccaacaatggtactatcacgcagacagcgatgagcataaagtgaaattgctcgct
cgttttattgagcaggaaaaggtgagcaagggcatcattttcgttcgccgccgtgaaacc
gtgcgagagctttccgacatcttgcgtaaacgtggcattcgcagcacctatttagaaggg
gagatggcgcaaacgcaacgcaataatgccattgataaactcaaaaatggtgtggtaacc
gtgctagttgccaccgatgtggctgcgcgtgggattgatattgatgacatcagccacgtg
atgaatatggatttgccttacagcgcagacacttatttacaccgcatcggacgcaccgcg
cgtgctggcaaaaaaggggtagcggtgtctttcgtagaagcgcacgattataaactgctc
ggcaaaattaaacgttacaccgaagagctgctcaaaccacgcattatcgaaggtttagaa
ccgcgcaccaaagcaccgaaagacggtgaaataaaaagtgtcagcaaaaaacaaaaagcg
cgcattaaacaaaagcgggcagaaaagaaaaaatcagaacagcagaaaaaaactaaactc
cgccataaagacacaaaaaacatcggcaaacgccgtaaaccgagtgggggagaggggtaa
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