Avibacterium volantium: NCTC3438_00346
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Entry
NCTC3438_00346 CDS
T06626
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase recQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
avt
Avibacterium volantium
Pathway
avt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC3438_00346 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avt03019
]
NCTC3438_00346 (recQ)
03400 DNA repair and recombination proteins [BR:
avt03400
]
NCTC3438_00346 (recQ)
Enzymes [BR:
avt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC3438_00346 (recQ)
Messenger RNA biogenesis [BR:
avt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC3438_00346 (recQ)
DNA repair and recombination proteins [BR:
avt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NCTC3438_00346 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HEM4
Hanta_Gn-B
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
VEB22242
UniProt:
A0A3S4J801
LinkDB
All DBs
Position
1:339627..341471
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AA seq
614 aa
AA seq
DB search
MEKNTALKVLNEVFGYQSFRNGQEEVINAALSHQDSLVIMATGNGKSLCYQIPALCFPGL
TLVISPLISLMKDQVDQLLANGIEVDYLNSTQTFEQQQIVQNKAISGQLKLLYISPEKAM
TTSFFQFISHCQVSFIAIDEAHCISQWGHDFRPEYTQLGGLKRCFPNAPIMALTATADSA
TRQDILHHLQLDNPHIYIGSFDRPNIRYTLVEKFKPMEQLCQFVLGQKGKSGIVYCNSRN
KVERLAESLRKKGVAAQAYHAGMEASQREQVQRAFQRDNVQVVVATVAFGMGINKSNVRF
VAHFDLPRSIEAYYQETGRAGRDDLPAEAVLFYEPADYAWLQKMLLEKPESPQRQIEQHK
LEAIGEFAESQTCRRLVLLNYFGEHRQAPCKNCDICLDPPKKYDGLIDAQKVMSTIYRVG
QMFGVHYVIGVLRGMQNQKIKDNQHDQLSVYGIGKDKSKEYWQSVIRQLIHLGLVQQVMN
QFHSVLQLTENARPILRGEQPLELAMPRVSSIMTAQSAQKSAVQNYDKDLFARLRFLRKQ
IADKENIPPYIVFNDATLQEMAQYQPTSKREMLQINGVGATKLERFGQAFLHIIQEHKSL
SAKNSQPLKLSNEK
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaaacaccgcacttaaggttttgaacgaggtttttggttaccaatctttccgc
aacggacaagaagaagtgatcaacgccgccctttcacaccaagatagccttgtgattatg
gcaacgggaaacggaaaatccctttgctatcaaattcctgcgctttgctttccggggcta
accttagtcatttcaccgctgatttccttaatgaaagatcaagtggatcaactgcttgct
aacggtattgaagtggattatctcaattccacacaaacctttgagcagcagcaaattgta
caaaataaggcgatttcagggcagctcaaattgctttatatttcgcccgaaaaggcgatg
acaaccagttttttccaatttatttcccattgccaagtgagcttcatcgccattgacgaa
gcccattgtatttcccaatggggacacgatttccgccctgaatacactcaacttggcggg
ctgaaacgctgttttcctaatgccccgataatggcactcaccgccaccgcagacagtgcc
acaaggcaagatattttgcaccatttgcaactggataatccgcatatttatatcggcagt
tttgatcgcccaaatattcgctataccttggtagaaaaatttaaaccaatggagcagcta
tgccaatttgtgctagggcagaagggcaaaagtggtatcgtttattgcaacagtcgcaac
aaggtggaacgcttggcggaaagtttgcgcaaaaaaggtgtggcagcgcaagcctatcac
gcaggaatggaagccagccagcgcgagcaagtgcagcgtgcgtttcagcgtgataatgtg
caagtagtggtggcaaccgtagcctttggaatgggcattaacaaatccaacgtgcgattt
gtagcgcattttgatttgccacgcagtatcgaggcctattaccaagaaacagggcgcgca
gggcgtgatgacttgcctgctgaagccgtgctgttttacgagcctgccgattatgcgtgg
ctacaaaaaatgctgctggaaaaaccagaaagtccgcagcgccaaattgaacagcataaa
ttagaagccatcggcgaatttgccgaaagccaaacttgccgccgtttagttttgctgaat
tattttggcgaacatcgccaagcgccgtgcaaaaactgcgatatttgccttgatccgccg
aaaaaatatgacggcttaattgacgcacagaaagtaatgtccaccatttatcgtgtggga
caaatgttcggcgtgcattatgtgatcggcgtgctgcgcggaatgcaaaatcaaaaaatt
aaagataaccagcacgatcagctcagcgtgtacggcattggcaaagacaaaagcaaagaa
tattggcaatcggtgatccgccagctgattcatcttgggttggtgcaacaagtgatgaat
caatttcattcggtgttacagctgacggaaaatgcgcgcccaattttgcgtggtgaacag
cccttagagctggcaatgccaagggtttcttccattatgaccgcacaaagcgcacaaaaa
agtgcggtgcaaaattacgacaaagatctctttgctcgcctgcgtttcttacgcaaacaa
attgccgacaaagaaaatatccccccttatattgtgttcaacgatgccactttgcaagaa
atggcacaatatcaacccaccagcaagcgtgaaatgctacaaatcaatggcgtgggcgca
accaaattagagcgcttcggacaggcattcctgcatataatccaagagcataaatcgctc
agcgcaaaaaacagccaaccacttaaattatctaacgaaaaataa
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