Avibacterium volantium: NCTC3438_00454
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Entry
NCTC3438_00454 CDS
T06626
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
avt
Avibacterium volantium
Pathway
avt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
avt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC3438_00454 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avt03021
]
NCTC3438_00454 (rpoB)
03400 DNA repair and recombination proteins [BR:
avt03400
]
NCTC3438_00454 (rpoB)
Enzymes [BR:
avt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC3438_00454 (rpoB)
Transcription machinery [BR:
avt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC3438_00454 (rpoB)
DNA repair and recombination proteins [BR:
avt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC3438_00454 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
SPG4
Motif
Other DBs
NCBI-ProteinID:
VEB22448
UniProt:
A0A447SPB0
LinkDB
All DBs
Position
1:454528..458556
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AA seq
1342 aa
AA seq
DB search
MGYSYTEKKRIRKDFGKRPQVLNVPYLLTIQLDSFDKFIQRDPDGQQGLEAAFRSVFPIV
SNNGNTELQYVSYRLGEPVFDVRECQIRGTTYAAPLRVKLRLVSYDKDAAPGTIKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLYARIDRRRKLPATIILRALNYTTEEILDLFFDKVVFQIEDNKLLMT
LVPERLRGETATFDIVANGKTYVEVGRRITARHIRALEKDNVTQVEVPTEYIVGKVAAKD
YVDLETGEVICPANGEITLEILAKLAQAGYKTIETLFTNDLDYGPYISDTLRVDPTTDRL
SALVEIYRMMRPGEPPTKEAAEGLFDNLFFSPDRYDLSAVGRMKFNRSLGIEETTGSGIL
SKEDIVNVMRKLIDIRNGRGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVKERLS
LGDLEAVTPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVQATHYGRVCPIETPEGPNIGLINSLAVYARTNDYGFLETPYRKVVNGQVT
EEIEYLSAIEEGKYIIAQANSNLDDELRFTDTFVTCRGEHGESGLYRPEEIHYMDVSTQQ
IVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMEKPVALDSGVAVVAK
RGGTIQYVDASRIVVKVNEDETVAGEAGIDIYNLVKYTRSNQNTCINQIPCVKLGEPIER
GEILADGPSTDLGELALGQNMRVAFMPWNGYNFEDSMLVSERVVQEDRFTTIHIQELSCV
ARDTKLGSEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKD
LVEELEILEAGLFARVRNLLISGGIDAAQLDQLERTKWLEQTLSDEEKQSQLEQLAEQYE
ELRKDFEHKLEVKRGKIIQGDDLAPGVLKVVKVYLAVKRQIQPGDKMAGRHGNKGVISKI
NPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILETHLGLAAKGIGDQINAMIKQKQDVE
KLRGYIQKAYDLGGGSQKVDLSTFTDEEVMRLAQNLRKGLPLATPVFDGAHEEEIKGLLE
LGGLPTSGQITLYDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVSGNQQMDPGTP
ESFNVIMKEIRSLGINIDLDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atgggttactcctatactgagaaaaaacgtattcgtaaagacttcggcaaacgtccgcaa
gttttaaatgtaccttatttattaactattcaacttgattctttcgataaatttatccaa
agagatccagatggtcagcaaggcttagaagccgcattccgttctgtatttccaattgtc
agcaacaatggcaatacggaattacaatatgtgagctatcgcttaggcgagccagtattt
gatgtgcgtgaatgtcaaattcgcggcaccacttatgctgcgccattgcgtgtgaaatta
cgtcttgttagctatgacaaagatgccgcgccaggcacaattaaagatattaaagaacaa
gaagtttatatgggtgaaatcccattaatgacagataacggaacatttgtgattaatggt
actgagcgtgtaatcgtttcgcaattacaccgtagcccaggcgtattctttgatagcgac
aaaggtaaaacgcactcatcaggaaaagtgctttataacgcacgtattattccttaccgt
ggttcttggttagattttgagtttgatccaaaagataacttatatgcgcgtattgaccgc
cgccgtaaattgccggcaaccattattttgcgtgcattaaactatacaacagaagaaatt
ttagacttattcttcgataaagtcgttttccaaattgaagataacaaattattaatgacc
ttagtgccagaaagattgcgtggtgaaacggcaactttcgatattgtggcaaatggaaaa
acttatgttgaagtcggtcgccgtattacagctcgtcatatccgcgcccttgaaaaagac
aatgtgactcaggttgaagtgccaacagaatacattgtgggtaaagtggcagcgaaagat
tatgttgatcttgaaactggcgaagtgatttgccctgccaatggcgaaattacgctagag
attttagcgaaactcgctcaagcaggttacaaaacgatcgaaaccctatttactaacgat
ttagactacggcccatatatttcagataccttacgcgttgatccaactactgatcgctta
agtgcattggttgaaatctatcgtatgatgcgtccaggtgagccgccaacaaaagaagcg
gcagaaggtttatttgataacctgttcttctcaccagatcgctatgatttatctgcggta
ggtcgtatgaaattcaaccgctctttaggcattgaagaaaccactggcagcggcatttta
agcaaagaagatatcgttaatgtaatgcgtaaattaatcgatatccgtaacggtcgtggc
gaagtagatgatattgaccacttaggtaaccgccgtattcgttcagtaggtgaaatggca
gaaaaccaattccgtattggtttagtgcgtgttgagcgtgcggtgaaagagcgtctttct
ttaggcgatcttgaagcagttacaccacaagatttaatcaatgccaaaccaatttcggca
gcggtgaaagaattctttggttcatcacaactttcccagtttatggatcaaaataacccg
ctttcagaagtaacccataaacgccgtatttcagccttagggccaggtggtttaacccgt
gaacgtgcaggctttgaggtgcgagatgttcaagcaactcactatggtcgcgtgtgtcca
atcgaaacccctgaaggtccaaacatcggtttgatcaactctttagcggtgtatgcgcgt
actaacgattatggtttcttagaaacaccatatcgtaaagtggtaaatggccaagttact
gaagaaattgaatatttatcggccattgaagaaggcaaatatattatcgcgcaggcgaac
tcaaacttagatgatgagttacgttttaccgatactttcgtaacctgtcgtggtgaacac
ggtgagtctggtttataccgtccagaagaaattcactatatggacgtatcgacccaacaa
atcgtttctgtggcagccgcacttatcccgttccttgaacacgatgatgcgaaccgtgcc
ttgatgggggcgaacatgcaacgccaagcggtaccaaccttgcgtgcggataaaccatta
gtcggtacaggtatggaaaaaccggtggcgttagactctggtgttgcggttgtagcaaaa
cgtggtggaacaatccaatacgttgatgcttcacgtatcgtggtgaaagttaatgaagat
gaaaccgtagcaggtgaagcaggtattgatatttacaatcttgtgaaatatacccgctct
aaccaaaacacctgtattaaccaaattccttgcgtgaaattaggtgagccaattgaacgt
ggtgaaatccttgcggacgggccatcaacggatcttggtgaacttgccctcggtcaaaat
atgcgtgtggcatttatgccttggaatggttataactttgaagactcaatgttagtgtct
gagcgtgtggtgcaagaagatcgtttcactaccattcacattcaagagctttcttgtgtg
gcacgcgatactaaattaggttctgaagaaatcactgcagatattccaaacgtaggtgaa
gcggcattaagcaaacttgatgaatcagggattgtgtatatcggtgcggaagtaaaaggc
ggcgatattcttgtgggtaaagtgacaccaaaaggtgaaacgcaattaaccccagaagaa
aaattattacgcgcaatctttggtgaaaaagcgtctgatgtaaaagattcttcattacgt
gtaccaaacagcgtatctggtacagttattgacgttcaagtgttcactcgtgacggcgta
gaaaaagataaacgcgccttagaaatcgaagaaatgcagttaaaacaagcgaagaaagat
cttgtggaagaattagagatcttagaagcaggcttgtttgctcgtgttcgcaacttattg
atttcaggcggaattgacgctgcgcaattagatcaattagaacgcaccaaatggttagaa
caaaccctttcagacgaagaaaaacaaagccagttagagcaacttgcggagcaatatgaa
gagcttcgtaaagactttgagcataaactcgaagtgaaacgtggcaaaatcattcaaggt
gatgatcttgcaccgggcgtgttgaaagtggtgaaagtgtacctcgcggtgaaacgccaa
atccaaccgggtgataaaatggcaggtcgccacggtaacaaaggggttatctcaaaaatc
aacccagttgaagatatgccgtatgacgaaaatggtcagccagtagatatcgtattgaac
ccactgggcgtaccttcgcgtatgaacatcggtcagatccttgaaacgcacttaggttta
gcggcgaaaggaattggtgatcaaatcaatgcaatgattaaacaaaaacaagatgttgag
aaattgcgtggttatatccaaaaagcctatgacttaggtggtggttcacaaaaagtggat
ctttcaacctttaccgatgaagaagtgatgcgtttagcgcaaaacttacgcaaaggttta
ccattggcaacgccagtatttgatggtgcgcacgaagaagaaattaaaggcttattagag
ctaggtggattgccaacttcaggtcaaatcaccttatacgatggtcgcacaggtgagaaa
tttgaacgtccagtaaccgtaggttatatgtatatgctcaaattgaaccacttagttgat
gacaaaatgcacgcgcgttcaacaggttcttatagtcttgttacgcagcaaccattgggt
ggtaaagcacagttcggtggtcagcgtttcggtgagatggaggtttgggcgcttgaagct
tatggtgccgcttacaccttacaagaaatgcttaccgttaaatccgatgatgtgaacggc
cgtacgaagatgtacaaaaacatcgtgagcggtaaccaacaaatggatccgggtacacca
gaatctttcaacgtaattatgaaagaaattcgttcactcggtatcaatatcgacttagac
gaagaataa
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