Avibacterium volantium: NCTC3438_00535
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Entry
NCTC3438_00535 CDS
T06626
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
avt
Avibacterium volantium
Brite
KEGG Orthology (KO) [BR:
avt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
avt03009
]
NCTC3438_00535 (rlmD)
Enzymes [BR:
avt01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NCTC3438_00535 (rlmD)
Ribosome biogenesis [BR:
avt03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NCTC3438_00535 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Cons_hypoth95
PCMT
Methyltransf_15
Methyltr_RsmB-F
RrnaAD
MTS
Methyltransf_11
TRM5-TYW2_MTfase
Methyltransf_4
Methyltransf_23
Methyltransf_32
Ubie_methyltran
PrmA
UPF0020
DOT1
Motif
Other DBs
NCBI-ProteinID:
VEB22594
UniProt:
A0A3S4KYN4
LinkDB
All DBs
Position
1:complement(538912..540225)
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AA seq
437 aa
AA seq
DB search
MALLYSPKKVEKNHRTFTAQVQDLDYQGLGVAKIQGKTWFIENALPDEKVQVDVLEEKRQ
YGKGVAKKWLQTSPQRMQPACAHYAKCGGCQTQHIPLAMQREAKEHALFQRLTKLQAEPI
TLMPRIVGSQWHYRRRLRLSIYWDKKQGLRIGFRQKNSQNIEPVQSCLVIETPLNNLLPK
ITALLQNWSNPKNLGHIELVRADNGVALLLRHQKNLTENDRTLLLEFARQEHLMLFVQDD
VQIQQLYGESPYYELNNGQRLHFDVRDFIQINPQLNQAMIDTALDWLKLNAQDQVLDLFC
GMGNFTLPISRQAKQVVGVEGVAEMVQKATQNAERNGCKNVQFYQGDLAQSFAAQQWASQ
AFSKILLDPPRTGAAFAMPFLCQLQAEKVLYVSCNPATLVRDAQMLLQAGYQLTQVAMID
MFPNTGHLESITLFERK
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggcattactttactccccgaaaaaagtggaaaaaaaccaccgcacttttaccgcgcaa
gtacaagatttagattatcaagggctaggcgtggcaaaaattcaaggtaaaacgtggttt
atcgaaaatgcgctgccggatgaaaaggtgcaggtcgatgttttggaagaaaagcgtcaa
tatggcaaaggggttgcgaaaaaatggttgcaaactagcccacagcgtatgcagcctgct
tgtgctcattatgcaaaatgtggtggctgccaaactcagcatattcccttggcaatgcag
cgggaagctaaagagcacgcattatttcagcgtttaacgaaattgcaagctgaacctatc
accttaatgcctcgaattgtgggtagccaatggcattatcgccgccgtttacgtttgagt
atttattgggataaaaagcagggactgcgcattggttttcgccaaaaaaattcgcaaaat
attgagccagtgcagtcttgtcttgttatcgaaacaccactcaataatttgttgccaaaa
atcaccgcacttttgcaaaactggtctaacccgaaaaatttaggccatatcgaactggtg
cgcgcggataacggtgtggcattattgctacgtcatcaaaaaaatttgacagaaaacgac
cgcactttgttacttgaatttgctcgccaagaacacttaatgctgtttgtgcaagatgat
gtgcaaattcagcaactttatggcgaaagcccttattatgaattgaacaatgggcaacgg
ctgcattttgatgtgcgggattttattcagattaatccgcaactcaatcaagcaatgatt
gacaccgcactagattggctcaagttaaatgcacaagatcaggtgctggatttattctgc
ggaatgggcaatttcaccttgcctataagccgtcaagccaagcaagtggtgggcgtagag
ggcgtggcggaaatggtgcagaaagcgacacaaaatgcggaacgaaatggctgtaaaaat
gtccaattttatcaaggcgatctggcacaatcttttgctgcccaacagtgggcaagccaa
gcatttagtaagattttgctcgatcccccacgcacgggcgcggcatttgcaatgccattt
ttgtgtcagttacaggcagaaaaagtgttgtatgtgtcttgcaatcctgcgacattagta
cgcgatgcacaaatgctgttgcaagcaggctatcaattaactcaagtggcaatgatcgat
atgttcccaaatacagggcatttggagagcattactctctttgaacggaaataa
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