Avibacterium volantium: NCTC3438_00871
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Entry
NCTC3438_00871 CDS
T06626
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
avt
Avibacterium volantium
Pathway
avt03030
DNA replication
avt03430
Mismatch repair
avt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
avt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC3438_00871 (dnaE)
03430 Mismatch repair
NCTC3438_00871 (dnaE)
03440 Homologous recombination
NCTC3438_00871 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avt03032
]
NCTC3438_00871 (dnaE)
03400 DNA repair and recombination proteins [BR:
avt03400
]
NCTC3438_00871 (dnaE)
Enzymes [BR:
avt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCTC3438_00871 (dnaE)
DNA replication proteins [BR:
avt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NCTC3438_00871 (dnaE)
DNA repair and recombination proteins [BR:
avt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NCTC3438_00871 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
VEB23214
UniProt:
A0A3S4HSW0
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All DBs
Position
1:866832..870308
Genome browser
AA seq
1158 aa
AA seq
DB search
MSEPRFVHLRVHSDFSMINGIAKVKPLVKACVENEMVAMALTDFTNFCGLVRFYGEALGS
GVKPIVGADVLVKSDLLGDEHFELTLLAKNNTGYHNITLLLSKAYERGYTDLPYIDQQWL
VEHREGLIILSGGCNGDVGKKLLKNNPADVESAVRFYQEFFPDHFYLSLCRTGRPEEERY
IQAALKLAEKHHIPLVATNDVCFLSSEDFEAHEIRVAIHDSYTLDDPKRPKLYSDQQYFR
TEQEMCELFADIPTALANTVQIAKRCNVTIRLGEYFLPKFPTGDLSTEDYLVQKSREGLE
ERLAFLFPDEKERSEKRKEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPG
RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAET
YGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLVPPDPGMTLAKAFDAEPRL
PEIYESDEEVKALIDMARKLEGVTRNAGKHAGGVVISPGLITDFSPLYCDSEGKHPVTHF
DKNDVEYAGLVKFDFLGLRTLTIIKWALDMINTRLAKEGKPLVDINRIPLDDPQSFQVLL
NAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIRRKHGEEEI
SYPDAEYQHILLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEEMA
KQRSVFEEGAIKNGIDGTLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE
FMAAVMTSEMDNTEKIVGLYDECLRMGLTVTPPDINTGKHHFSVNDNGEIVYGIGAIKGV
GEGPIEALISAREQGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLGPHRAALAKN
LEDALKASDQYAKNEAIGQADMFGVLTETPEEVEQAYAKTPRWNEKQILDGERETLGLYL
SSHPISPYLKEIAHYSSTRLKDLVPNYRGQISTTCGLVVSSRVAITKKGNRLGIATLDDR
SGRLDLTLFGESLDRFGEKLQKDTIVIASGQVSFDDFTQGLKMSVRELMTLDEARSRYAK
SLAICLTQEQLSPHFIKQFKDTLSPYSGGALPINIYYQSPQGRALVKLGVQWSVNPSDEL
INTLVEMLGESAVEIEFK
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaccgcgtttcgtgcatttgcgtgtgcatagcgatttttcaatgattaatggt
attgcgaaagtaaaaccgttggtcaaagcctgcgtggaaaacgaaatggtggcaatggca
ttgacggatttcaccaacttctgcggtttagtgcggttttatggggaagctcttggctca
ggggtgaagcccattgttggggctgacgtgctagtgaaaagcgatttgctcggtgatgaa
cattttgaactcaccttgcttgcgaaaaataacacaggctatcacaacatcaccttatta
ttatccaaagcgtatgaacggggttacacggatttaccttatattgatcagcaatggttg
gtggaacaccgcgaaggcttgattattctttctggcggatgcaatggcgatgtggggaaa
aaattactgaaaaataatcctgcggatgtagaaagtgcggtgcgtttttatcaagaattt
ttccctgatcatttttatttaagcctttgtcgcacaggccgacccgaagaagagcgttat
attcaagctgccttaaaattggcagaaaaacatcatattcctcttgtggccaccaatgat
gtgtgctttttgtcttccgaagattttgaggcgcacgagatccgcgttgcgattcacgac
agctacacgttagatgatccaaaacgtccaaaattatacagcgatcagcaatatttccgc
actgaacaggaaatgtgcgaattatttgctgatattcccaccgcactggcgaataccgta
caaatcgccaaacgttgtaatgtaacgattcgtttgggcgagtatttcttaccaaaattt
cccacaggggatctcagcacggaagattatttggtacaaaaatcccgcgagggcttggaa
gaacgcttggcgtttttgttccccgatgaaaaagagcggtcagaaaaacgcaaggaatat
gatgaacgcttgcaagttgagctagacgtaattaaccaaatgggtttccctggttacttc
ttaatcgtaatggagtttatccagtggtcgaaagataatgatattcctgttgggccgggg
cgtggttctggggcgggatcgctggtagcttatgcgttgaaaattaccgatcttgatccc
cttgagtttgatttacttttcgagcgtttcttaaatccagaacgggtatcaatgcccgat
tttgacgtggatttctgtatggacgggcgagatcgcgtgattgaacacgttgcggaaacc
tacggacgtggcgcggtgtcgcagattatcacctttggtacgatggcggctaaggcggta
atccgagatgtggggcgtgtgcttggacacccttatagctttgtggatcgcatttccaaa
ttggtgccgcccgatccgggaatgaccttagccaaagcctttgacgcagaacctcgcttg
cctgaaatttatgaaagcgatgaagaagtcaaagccttaattgatatggcgcgcaagctt
gaaggggtaacccgtaacgcagggaaacacgctgggggcgtggtgatttccccagggctg
attaccgatttttcaccgctctattgtgatagtgagggcaaacaccctgttacccatttt
gataaaaatgatgtggaatatgcagggctagtgaagtttgacttcttgggactgcgcacc
ctaaccatcatcaaatgggcattagatatgattaacacgcgtcttgccaaagagggtaag
ccgttagtggacattaatcgcataccccttgatgatccgcaatctttccaagtgttactc
aatgcagaaacaaccgcggtgttccagctagagtcgcgcggaatgaaagatttgatcaaa
cgcctaaaaccggactgttttgaagatattatcgcgttggtggcgttattccgcccaggg
ccattgcaatcgggaatggtggataactttattcgccgtaaacacggtgaagaagaaatt
tcctaccctgatgcggaatatcagcacattttgcttaaaccaattttagagccaacttat
ggcattattttgtatcaagagcaggtaatgcaaattgctcaggtgctagctggttatacg
ctcggcggtgcggatttattacgccgtgcaatggggaaaaagaaaccagaagaaatggcg
aaacagcgctcggtgtttgaagaaggggcgattaaaaacggaattgacggcacccttgca
atgaaaattttcgatttggtggaaaaatttgcaggttatggctttaataaatctcactcc
gccgcttatgccttggtttcttaccaaacgctctggctcaaagcccattatcctgcggaa
tttatggcagcggtaatgacttctgaaatggataacacagaaaaaatcgttgggctatac
gatgaatgtttgcgtatgggcttaacggttacgccgccagatattaataccggaaaacac
catttcagcgtgaatgataatggcgagattgtgtatggcattggcgcaattaaaggggtg
ggtgaaggcccgattgaagccttgatttctgcgcgtgagcaaggaggcatttttaaagat
ttattcgatctttgcgccagagtagatttaaagaaaattaaccgccgcacttttgaaagc
ctgataatgtcaggtgcattcgataaattaggcccacaccgtgctgcgctggcaaaaaat
ttagaagatgcgctcaaagcctccgatcaatatgctaaaaatgaagctatcgggcaggca
gatatgtttggcgtgctaactgaaacgccagaagaagtagagcaggcttatgcgaaaacc
ccacgttggaacgaaaaacaaattttagacggcgaacgggaaactctcggactttattta
agcagccacccgattagcccttatttaaaagagatcgcccattacagctcaacaagatta
aaagatcttgtgccaaattatcgtggacaaattagcacaacttgcggtttagtggtgagt
tcgcgtgtggcgatcacgaaaaaaggcaaccgcttaggcattgccaccttagatgaccgc
tcggggcgtttagatctcacgttattcggtgagagcctcgatcgttttggtgaaaaattg
cagaaagacaccattgtaattgcttcagggcaggtgagttttgacgattttactcagggg
ttaaaaatgtcagtgcgtgaattaatgacccttgatgaagcgcgcagtcgttatgccaaa
agtctggcaatttgcttaacgcaagaacagctttcaccacattttattaagcaatttaaa
gatactcttagcccatatagtggcggtgcgttacccattaatatttattaccaaagtcca
caaggacgcgcgttagtgaaacttggcgtgcagtggtcagtgaatccaagtgatgaattg
attaatacgctagtggaaatgctaggcgaaagtgcggtggaaattgagtttaaataa
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