Avibacterium volantium: NCTC3438_01518
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Entry
NCTC3438_01518 CDS
T06626
Symbol
topA_2
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
avt
Avibacterium volantium
Brite
KEGG Orthology (KO) [BR:
avt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avt03032
]
NCTC3438_01518 (topA_2)
03400 DNA repair and recombination proteins [BR:
avt03400
]
NCTC3438_01518 (topA_2)
Enzymes [BR:
avt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NCTC3438_01518 (topA_2)
DNA replication proteins [BR:
avt03032
]
Prokaryotic type
DNA Topoisomerases
NCTC3438_01518 (topA_2)
DNA repair and recombination proteins [BR:
avt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NCTC3438_01518 (topA_2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Zn_Ribbon_TF
DUF7351
DUF4795
Motif
Other DBs
NCBI-ProteinID:
VEB24435
UniProt:
A0A3S4L034
LinkDB
All DBs
Position
1:complement(1540877..1543483)
Genome browser
AA seq
868 aa
AA seq
DB search
MSKSLVIVESPAKAKTINKYLGKDYIVKSSVGHICDLPTAGMSTGEKAKAISTKGLSPEE
KQAIKQEKERNALVKRMGIDPYHDWKANYQILPGKEKVVAELKSLAKKADHIYLATDLDR
EGEAIAWHLREVIGGDDDRFSRVVFNEITKNAITQAFEHPEHLNMDRVNAQQTRRFLDRV
VGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFQPEEYWEVAVQTETAQKIGL
RLDVTSFKGKKFEPKNAQQAQSAVDFLQKSDYIVSDLETKPTSSKPKAPFITSTLQQTAS
TRLNFGVKKTMMLAQRLYEAGYITYMRTDSTNLSKDALNMVRDYIGSNYGDAYLPAKPNF
YSSKDNAQEAHEAIRPSDVRVLAADVQGMDKDAVRLYDLIWRQFVACQMPAAQYDSSTLT
VTAGDYGLKAKGRILRFDGWTKVLPPMSKSAEDQVLPAVAVNDQLNLKEVIPQQHFTKPP
ARFTEAALVKELEKRGIGRPSTYAAIISTIQDRGYVRVENRRFYAEKMGEIVTDRLNQSF
TDLMNYDFTANMEDVLDQIANGEKNWKAELNQFFKDFSAQLSQAELDELEGGMKPNSLVL
TDIKCPTCGRPMAIRTASTGVFLGCSGYALPPKERCKTTINLIPEAELLNVLDEASETKA
LMDRKRCPKCGTAMDSYIIDPQRKLYVCGNNPNCDGYVVEQGEFKIKGYDGPVVECDKCG
ADMHLKLGRFGKYMACIQCDNTRKILKNGEVAPPKEEPVHFPELKCENSDAYFVLRDGAS
GVFMSAHNFPKSRETRAAKVAELALYRDRLPEKLQYLADAPQKDPEGNEAIVRFSRKEKR
QYITSEKNGKATKWRADYIDGKWVENGK
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaatctttagtgattgtggagtcgccagccaaggcgaaaaccattaataagtat
ttaggaaaggattatatagtgaaatccagcgtagggcatatttgcgatttacctaccgct
ggaatgagtactggtgaaaaagccaaggcaatttctactaaaggattaagccccgaagaa
aagcaagccattaagcaagaaaaagaacgtaatgccttggtgaagcgtatggggatcgat
ccttatcacgattggaaagccaattaccaaattttaccgggtaaagaaaaagtggtggcg
gagctgaaatcgttggcgaaaaaagcggatcatatttaccttgccaccgatttggataga
gaaggggaagccattgcttggcatttgcgtgaagtgattggcggtgatgatgatcgcttt
agccgtgtggtattcaacgagatcaccaaaaatgccatcactcaagcctttgaacaccct
gaacatctcaatatggatcgcgttaatgcccaacaaacacgccgttttcttgatcgcgtg
gtgggctttatggtgtcgccattattatggaagaaagtggcgcgcggcttatcagcaggg
cgtgtgcaatcggtcgcggtgaaattattagtagaacgcgagcgtgagatcaaagctttc
caacctgaagaatattgggaagtggcggtgcaaacggaaaccgcacagaaaattggtttg
cgtcttgatgtaaccagttttaaagggaaaaaatttgagccgaagaatgcacaacaagcg
caaagtgcggtggattttttacaaaaatctgactatatcgtttctgatttagaaaccaag
ccaactagctctaaaccgaaagcaccatttattacttcaaccttgcaacaaaccgcaagt
actcgccttaattttggcgtgaaaaaaacaatgatgctggcgcagcgtttgtatgaagca
ggttatattacctatatgcgtaccgatagcactaatttgagtaaagatgcgttaaatatg
gtgcgtgattatatcggttcaaattatggtgatgcctatttgccggctaagccgaatttt
tattcgagcaaagataatgcgcaagaggcgcacgaagctattcgtccttctgatgtgcgt
gtgttggctgctgatgtgcaaggaatggataaagatgcggtgcgtttatacgatctcatt
tggcgtcaatttgtggcttgccaaatgcctgccgcacaatatgatagctctacgctcacg
gtaacggcgggcgattacggtctgaaagccaaaggacgtattttacgttttgacggttgg
acgaaagtgttaccaccaatgagcaaaagtgctgaagatcaagtgctgccagcagttgcg
gtgaacgatcagctaaatttaaaagaagtgattccacagcaacatttcaccaagccgcct
gcgcgctttaccgaagctgcactggtaaaagagctggaaaaacgcggaattggtcgccct
tctacttatgccgcgatcatttcaaccattcaagatcgtggttatgtgcgggtggaaaat
cgccgtttttatgcggaaaaaatgggggagattgttaccgatcgccttaaccaatcgttt
accgatttaatgaattatgatttcaccgccaatatggaagatgtgctagaccaaattgcc
aacggtgaaaaaaattggaaagcggaattaaatcaattctttaaagatttttctgcacag
ctgagccaagccgaattagatgagctagaaggcggaatgaagccaaatagccttgtgcta
accgatattaaatgcccaacttgtggtcgcccaatggcgattcgtactgcaagcactggc
gtattcttaggctgttcaggctatgctttaccaccaaaagagcggtgcaaaacgacaata
aatttaattccagaagccgaattattaaatgtgctggacgaggcttctgaaaccaaagcc
ctaatggatcgcaaacgttgcccgaaatgtggcacggcaatggatagctatattattgat
ccgcaaagaaaactttatgtgtgcggaaataatccaaattgtgatggctatgtggtggag
caaggcgagtttaagattaaaggttatgacggcccagtggtggaatgtgataagtgtggc
gcagatatgcacttaaaactggggcgttttggcaaatatatggcttgtatccaatgtgat
aacacgcgcaaaatcttaaaaaatggcgaagttgcgccaccaaaagaagagccagtacat
ttcccagagctaaaatgtgaaaattctgatgcgtattttgtattgcgtgatggcgcaagt
ggcgtgtttatgtctgcgcataatttcccgaaatctcgtgaaactcgtgcagctaaagtg
gcagaattggcgttatatcgtgatcgcctgcctgaaaaattgcaatatttagccgatgcg
ccacagaaagatcctgaaggcaacgaggccatcgttcgctttagccgtaaggaaaaacgt
caatatattacctctgaaaaaaatggcaaagccacaaaatggcgtgctgattatattgac
ggaaaatgggttgagaatggtaaataa
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