Avibacterium volantium: NCTC3438_01724
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Entry
NCTC3438_01724 CDS
T06626
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
avt
Avibacterium volantium
Brite
KEGG Orthology (KO) [BR:
avt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avt03019
]
NCTC3438_01724
Enzymes [BR:
avt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NCTC3438_01724
Messenger RNA biogenesis [BR:
avt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NCTC3438_01724
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
AAA_22
nSTAND3
HA2_N
ResIII
NACHT
T2SSE
PhoH
ABC_tran
SRP54
Zeta_toxin
FtsK_SpoIIIE
TsaE
AAA_25
Motif
Other DBs
NCBI-ProteinID:
VEB24834
UniProt:
A0A3S4H610
LinkDB
All DBs
Position
1:complement(1768163..1772104)
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AA seq
1313 aa
AA seq
DB search
MKTDVILYIKPMKNTKHKQPFSPLQKALFAQLTEMMNVDYRRLQGRIKGLHQIKNPQTQE
KVAAEIQLQIQQAQARLQQRESAVGKIEFPENLPVSQRKDEILKAIEQNQVVIIAGETGS
GKTTQLPKMCLELGRGKKGLIGHTQPRRIAARSVATRIAEELHCELGTLVGYKVRFNDQS
SDDTQIKLMTDGILLAEIQSDPFLNQYDTLIIDEAHERSLNNDFILGYLKQLLPKRPDLK
VIITSATIDVERFSRHFNNAPIIEVSGRTYPVEVRYRPVAETEEQDQIQSILNAVDELQA
EGRGDILIFLNGEREIRDTAEALEKQHLKHTEILPLFARLSAQEQNKIFHPSGLNRIVLA
TNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRISEGI
CIRLYSEEDFNQRPEFTDPEILRTNLASVILQMTALGLDDISAFPFVDAPDKRHIQDGIK
LLEELQAFQIVKTKHGEKRQLTQIGRQLAQLPVDPRLGRMMIEAAKLGCLHEVMIIVAAL
SIQDPRERPQEKQQAADEKHRRFADKKSDFLAFLNLWNYLQEQQKALSKNQFRRLCQKDY
LNYIRVREWQDIYHQIRLTVREMGLPINSQAAEYPQIHTALLSGLLSHIGMKEAEKQQYL
GARNAHFAIFPNSVLFKKQPKWCMAAELVETSKLWGRMVAEIEPEWIEPLAQHLVKKSYA
EPRWSKSKGAVIANEKVTLYGVPIVANRPVNYGKIDPAVSREIFIQSALVEGNWHTKHTF
FLQNQRLIREVEELEHKTRRRDILVDERRLFEFYDQRIGTEVVSQKHFDTWWKKARQKDP
ELLNFEKAFLTNDNANVSELDFPNFWHQGNLKLKLSYQFEPGMEADGVTVHIPLPLLNQV
EMQGFDWQIPGLRKELIIALIKSLSKTLRRHFVPAPNYAEAFLGRVNDLDKPLLETLSAE
LRKITGVYVAPDEWNLAQIPPHLTMTFRVVNEKGKKIAESKNLDELKVSLKEQVQETLSA
VADEGIEQTGIHLWNFDQLPQYYEQKKQGFTIKAYPAIVDEKDSVGIKLFETEFEQAVAM
EQGLRRLLLLNVPSPIKYLHEKLPNKSKLGLYFTPFGKVLELIDDCIACAVDKLVQDFGG
FVWNEQDFERLKDYIRANLNETTVDIAKQVEEILTLVFEINKRLKGKMDFTLAFALSDIK
AQINHLIYPNFVQKTGYQRLPDLLRYLQAIDKRIDKLLQDPNRDRAAMLRVENVEKAYQQ
LLLKLPKSKPIPAEVAEIPYMIEELRVSLFAQQLGTKYPISDKRILNVINEVG
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacggacgtgatcctatatataaaaccaatgaaaaatacaaaacacaaacaacca
tttagcccattacaaaaagccttatttgctcaattaacggagatgatgaacgtggattat
cgccgtctgcaagggcgaattaaagggctgcatcaaatcaaaaatccacaaacccaagaa
aaagttgctgcagaaattcagttacaaattcagcaggcgcaagcacgtttacagcaacga
gaaagtgcggtgggaaaaattgaatttcctgaaaacttgccagtaagccagcgcaaagat
gaaattctcaaagccattgagcaaaatcaagtagtaattattgcgggggaaacagggtca
ggtaaaaccacccagctgccgaaaatgtgtcttgagttaggacgtggaaaaaaaggctta
attggacacacccaaccgcgccgcattgctgcacgctctgtggcaacacgcattgccgaa
gaactacattgtgagctaggaacgctggtgggttataaggtacgctttaacgatcaaagc
agtgatgacacccaaattaagctgatgacagatggtattttgctcgctgaaattcaaagt
gatccttttttaaatcaatacgatactttgatcattgacgaagctcacgaacgcagcctg
aataacgattttattcttggttatttaaaacagctgctgccaaaacgcccagatttaaaa
gtgattatcacctcggcaaccattgatgtggagcgtttttcgcgtcattttaataatgcg
ccaattattgaagtttcggggcgaacctatcctgtggaagtgcgctatcgccctgtggcg
gaaacggaagaacaagatcaaatccaatccattcttaatgccgttgatgaattgcaggca
gaggggcggggcgatatcttgattttcctaaatggtgagcgtgaaattcgtgacaccgca
gaagccttggaaaaacagcatttaaaacacactgaaattctaccgctctttgctcgctta
tcggcgcaagagcaaaataaaatttttcacccaagtggcttaaatcgcatcgtgcttgcc
accaacgtggcagaaacttcactgaccgtaccagggattaaatatgtgatcgaccccggc
acggcgcgcatttcccgttatagctaccgcaccaaagtacaacgcttgcccattgagccg
atttcacaagcttcggcaaatcaacgtaaaggccgttgtggacggatatctgaagggatt
tgtatccgcctttattcggaagaggattttaatcagcgcccagaatttaccgatcctgaa
attttgcgtaccaatcttgcctcggtcatcttacaaatgactgcccttgggctagatgat
attagtgcatttcctttcgtcgatgcccctgacaaacgtcatattcaagacggtattaag
ttgttggaagaattgcaagctttccaaatcgtgaaaaccaagcacggcgaaaaacgccag
ctcacgcaaattggacgccagcttgctcagctaccagttgatcctcgtttggggcgaatg
atgattgaagcggcgaagctcggttgtttgcacgaagtgatgatcatcgttgccgccctt
tccattcaagatccgcgagaacgtccacaagaaaaacagcaggcggcagatgaaaaacat
cgtcgttttgcggataaaaaatccgattttctcgcgttcttaaacttgtggaattatctg
caagaacagcaaaaagccttgagcaaaaaccagttccgccgtttgtgtcagaaagattat
ttgaattatatccgcgtgcgggaatggcaagatatttatcatcaaattcgtttaaccgtg
cgtgaaatgggtttgccgattaattcgcaagcggcagaatatccgcaaattcacaccgca
cttttatcgggtttgctttctcatattggtatgaaagaagcggaaaaacagcaatattta
ggcgcaagaaatgcccattttgcaatttttcctaattccgtgctattcaagaagcagcca
aaatggtgtatggcagcagaattagtggaaacctctaaattatgggggcgaatggtggca
gagatcgagcccgaatggattgagccattggcacagcatttagtgaaaaaatcttatgct
gagccacgctggtcaaaatccaaaggggcggttatcgcgaatgaaaaagtgaccctttat
ggcgtgccgattgtggcaaatcgtcctgtgaactatggcaaaattgatccggcggtaagc
cgtgaaatttttattcaatctgccttggtggaaggaaattggcacacgaaacacaccttc
ttcttgcaaaatcaacggctgattcgcgaagtggaagagttagagcacaaaacacgccgc
cgagatattttggtggacgaacgccgtttatttgaattttatgatcaacgcattggcaca
gaagtggtgtcgcaaaagcattttgatacttggtggaaaaaagcgcggcaaaaagatcct
gaattgttgaattttgaaaaagcctttctcaccaatgataacgccaatgtcagcgagcta
gatttccctaatttctggcatcaaggcaatttaaaattaaagcttagctatcaatttgaa
ccgggtatggaagccgatggcgtaaccgtgcatattcctttgccactgcttaaccaagtg
gaaatgcagggttttgactggcaaattccgggcttacgcaaagaattgattatcgccctg
attaaatccttatcaaaaacattacgccgccattttgtgccagcaccgaattatgcggaa
gcctttcttggacgcgtgaatgatttggataaacccttgctagaaacgttgtctgcggaa
ttgcgtaaaatcacaggggtttatgtagctcctgatgaatggaatctcgcgcaaattcca
ccgcacttaacaatgacattccgtgtggttaatgaaaaaggtaagaaaattgccgagagt
aaaaatttagatgaactcaaagtaagtctgaaagagcaagtgcaggaaactttgtcagcg
gtggcagatgaaggtattgagcaaacagggattcatttatggaatttcgaccaattaccg
caatattatgagcagaaaaaacaaggctttaccatcaaagcctatcctgccattgtggac
gaaaaagattctgttgggattaaattatttgaaacagaatttgagcaagccgtcgcaatg
gaacaaggactacgccgcttattattgcttaacgtgccatcgccgataaagtatctacac
gaaaaactgcctaacaaatcaaaattagggctgtatttcacaccatttggcaaagtgctg
gaattgattgatgattgtatcgcctgcgccgtggataaattggtgcaagatttcggcggt
tttgtgtggaatgaacaggattttgaacgcctaaaagactatattcgagccaatttaaac
gaaaccacagtggatattgccaaacaagtggaagagattttgacgctcgtgtttgaaatc
aacaaacgcttaaaaggaaaaatggatttcaccttagcttttgccctttcggatattaaa
gcgcaaatcaatcatcttatttacccaaattttgtgcagaaaacgggctatcaacgcttg
ccagatttattacgttatttgcaagccattgataaacgcattgacaaattactgcaagat
cccaaccgtgatcgtgccgcaatgttgcgagtagaaaacgtagaaaaggcgtatcagcag
ttattattaaaattgccaaaatccaagccaatccccgcagaagtggcagagatcccttat
atgatcgaggaactacgcgtcagcctattcgcccaacaacttggcacgaaatatcctatt
tcggataaacgaattttgaatgtgattaatgaggtggggtag
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