Avibacterium volantium: NCTC3438_01845
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Entry
NCTC3438_01845 CDS
T06626
Symbol
rnb
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
avt
Avibacterium volantium
Brite
KEGG Orthology (KO) [BR:
avt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
avt03016
]
NCTC3438_01845 (rnb)
Enzymes [BR:
avt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC3438_01845 (rnb)
Transfer RNA biogenesis [BR:
avt03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NCTC3438_01845 (rnb)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
VEB24982
UniProt:
A0A3S4HKC0
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All DBs
Position
1:1917232..1919211
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AA seq
659 aa
AA seq
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MFQNNPLLSQLKQQIRDSKPVVEGVVRGSDKAFGFLETEKKSYFIPPAAMKKVMHGDKIK
ARIETIGDKEQAEPEELLEPMLTRFIAKVRFNKDKKLQVLVDHPQINQPIGANKAKAVTE
DLQEGDWVVAELKTHPLRDDRFLFAQITQFICQKDDEFAPWWVTLARHQQSRYPVQGQES
YTMLDQQTREDLTALHFVTIDSESTQDMDDALYIETLEENGQAVGWKLVVAIADPTAYID
ENSLIEQEAKQRCFTNYLPGFNIPMLPRELSDELCSLMENEVRPALVCTIEIDQQGNIRN
KPVFQSANVQSKAKLAYNKVSDYLEQQENAWQPEDPATKNQIDLLHQFTLARIQWRKTHS
LLFKEKPDYSFKLAENGKVAEIVAEYRRIANQIVEESMILANICAAQYLNETAQCGIFNT
HSGFDQKNLAAAQQFLLSQLANEENEAELKDRYSSENLATLEGYCRMRHDIEPIEGDYLE
LRLRRYLTFAEFKADLAPHFGLGLQGYATWTSPIRKYSDMINHRLIKASLTTQQYHRPAD
DVLQRLQEARRQNRLIERDIADWLYCRYLADKVENNLQFEAEIQDVMRGGLRVLLLENGA
SMFIPASTIHNNKEEMQVNPDEIALYIKGEKAYKIGDKIQVQLTEVKEETRSIIGQVLV
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaaaataaccccttactttcccaattaaaacagcaaattcgtgatagcaaacct
gtggttgaaggcgtggtgcgcggttcagacaaggcattcggctttttagaaacggagaaa
aaaagctatttcattccccctgctgcaatgaaaaaagtgatgcatggtgataaaatcaaa
gcgcgcattgaaaccattggcgataaagaacaagccgaaccagaagaattgcttgagcca
atgctaacccgttttatcgccaaagtgcggttcaataaagacaaaaaattgcaagtgctg
gtggatcacccccaaatcaatcaacccattggcgcaaataaagccaaagcggtaacggaa
gatctgcaagaaggcgattgggtggtggcagaattaaaaacgcacccactgcgtgatgat
cgctttttgttcgctcaaatcacacagttcatttgccaaaaagacgatgaatttgcccct
tggtgggtaaccctcgcgcgccatcagcaatcgcgctaccctgttcaagggcaagaaagt
tacacaatgctcgatcaacaaactcgtgaagatttgaccgcacttcatttcgtgactatc
gacagcgaaagcacgcaagatatggacgatgcgctttatatcgaaaccttggaagaaaat
ggacaagcagtgggctggaaattagtggtggcgattgccgatccaaccgcttacattgac
gaaaattcactgattgaacaagaagccaagcagcgttgttttaccaattatctaccaggt
ttcaacattccaatgttgccgcgtgagctttctgatgagctttgttctctcatggaaaat
gaagtgcgccccgcgttggtttgcaccattgaaattgatcaacaaggcaatattcgtaac
aaacccgttttccaatccgccaatgtacaatctaaggcgaagttggcgtacaacaaggtt
tcagattatttagaacaacaagaaaatgcgtggcagccagaagatcctgccacgaaaaat
caaattgatttgctacaccaattcacccttgcgcgtattcaatggcgcaaaacccactct
ttattatttaaagaaaagccagattacagctttaaattagcggaaaacggcaaggtggcg
gagatcgtggcagaatatcgccgcattgcgaaccaaatcgtggaagaatcaatgatttta
gctaatatttgtgccgcacaatatctcaatgaaacggcacaatgtggcattttcaacacg
cacagcggctttgatcaaaaaaaccttgcagctgcacagcaatttcttctttcacaatta
gccaatgaagaaaatgaagcagaactcaaagatcgttattctagcgaaaacttagccacc
ctcgaaggctactgccgtatgcgccacgatattgaacctattgaaggagattatcttgaa
ctgcgcctgcgccgctatctcacttttgctgaatttaaagcggatcttgctccgcacttt
ggtttagggttgcaaggctacgccacttggacatcaccaatccgtaaatattcggatatg
atcaatcaccgtttaatcaaagcgagcctgaccactcagcaatatcacagaccagcagac
gatgtgttgcaacgcttacaagaagcacgccgtcaaaaccgtttaattgaacgagatatt
gccgactggctatactgccgttatttagccgacaaagtggaaaacaacctacaatttgaa
gcggaaatccaagatgttatgcgtggcggattgcgtgtgttattgttagaaaacggcgca
tcaatgtttatccccgcttccactattcacaataacaaggaagaaatgcaggtaaaccca
gacgaaatagccctttatatcaaaggcgaaaaagcctataaaatcggcgataaaatccaa
gtgcagctcacggaagtgaaagaggaaacacgaagtattatcggacaggttttggtttag
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