Agrobacterium vitis VAT03-9: RvVAT039_01350
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Entry
RvVAT039_01350 CDS
T08809
Symbol
secD
Name
(GenBank) protein translocase subunit SecDF
KO
K12257
SecD/SecF fusion protein
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv02024
Quorum sensing
avv03060
Protein export
avv03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03060 Protein export
RvVAT039_01350 (secD)
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
RvVAT039_01350 (secD)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RvVAT039_01350 (secD)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
avv02044
]
RvVAT039_01350 (secD)
Secretion system [BR:
avv02044
]
Sec (secretion) system
Prokaryotic Sec-SRP core components
RvVAT039_01350 (secD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SecD_SecF_C
SecDF_P1_head
SecD_1st
Sec_GG
SecD-TM1
MMPL
Motif
Other DBs
NCBI-ProteinID:
BCH62919
LinkDB
All DBs
Position
1:complement(142497..145067)
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AA seq
856 aa
AA seq
DB search
MLHFSRWKTILLWLAVVASVLIALPDLFSKDQLARLPSWFPSKQMTLGLDLQGGSHIMLK
IERNDIVKERLEAVVGDIRSSLRDAGVRYTGLNGVGQAVQVRITDPSQLDAARKALQTLT
APVSTGGFGSSSVQEATLDDSGDGVLKFNLTDAGIDYRMSSALTQSIEVVRRRVDELGNT
EPLIQRQGSDRIIVQVPGLDDPQRLKNLLNQTAKLSFRMVDTSMSATEAISGRPPATSEV
LYSQDEAAVPYLVEKRVLVSGEDLVDAQASFNQQNNEPVVSFRFDSRGAQRFAQATQQNV
GRPFAIVLDNQVISAPVIREPIVGGSGQISGNFTVQGANDLAVLLRAGALPATLTVVEER
TVGPSLGADSIRAGVSAGFIGAGLVVVLMIGLYGFFGVLAVLALFANIVMIIAILTLLGS
TLTLPGIAGIVLTIGMAVDSNVLIYERIREEYKSGRSLIQSIDIGFNKALATIVDANVTT
LIAAGVLFFLGSGPVRGFSVTLAIGIITTVFTAFGLTRWMFTVWVNTRRPKALPKGVRTG
IFDGTNIPFMGVRRYTFLLSAALSIAALVGFGTVGMKLGIDFTGGSIIELKARQGNADPA
AIREQLSSLNLGDVQVQGFGDPSSVLVRLQAQDEGENGEQSAVAKVRGALEQAYEFRRTE
VVGPSVSGELTKSATIGVLISLMAILVYIWIRFEWQFAAGAIIATLHDVILTLGLYVVTG
VEFDLSSIAAILTIVGYSLNDTVVVYDRMRENLRRYKKMPLDVLIDTSINQTLSRTILTS
VTTLLALLALFLFGGEVIRSFTFAMLFGVLVGTFSSIYMAAPVLIAFRLRPEGQGEPDKA
EKAKPEKNGATGKAGA
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgctgcatttctcccgctggaaaaccattctcctctggcttgccgtcgtggcgagcgtc
ctgatcgcgctgcccgacctgttcagcaaggatcaactggcccgtcttccgtcctggttc
ccgagcaagcagatgacgctcggcctcgatttgcagggcggctcgcatatcatgctgaag
atcgagcgcaacgatatcgtcaaggagcggctcgaagccgtggttggcgatatccgcagc
agtcttcgcgatgcgggcgttcgctataccgggctgaatggcgttggtcaggcggtccag
gtccgcattaccgatccgtctcagcttgatgcggcgcgcaaggccttgcagacactgact
gcgccggtcagcaccggcggtttcgggtcgagcagcgtccaggaagcgacactggacgat
agcggcgatggggtgttgaagtttaacctcaccgatgccggtatcgattaccgcatgtcc
tcggcgctcacccagtccatcgaagtcgtgcgccgccgcgtcgatgagcttggcaatacc
gagccgttgatccagcgtcagggctccgaccggatcatcgtgcaggtgccgggtctggat
gatccgcagcgtttgaagaatcttctgaaccagaccgcgaaactaagcttccgcatggtc
gataccagcatgtcggccaccgaagccataagcggccgcccgcctgccacgtccgaagtg
ctctacagccaggatgaggctgcggtgccttatctggtcgaaaagcgcgttctggtgtcc
ggtgaggatctcgtcgatgcgcaggcaagcttcaatcagcagaataacgaaccggtcgtc
agcttccgcttcgatagccgtggtgcgcagcggtttgcccaggcgacccaacagaatgtc
gggcggccctttgccatcgtgctcgacaatcaggtgatttccgcgcctgtgatccgtgaa
ccgattgtcggtggctccggccagatttccggtaatttcacggtgcagggcgccaatgac
ctggccgtcctgctgcgcgctggcgcactgccagcaaccttgaccgtggtcgaagagcgc
accgtcggcccaagccttggcgccgattcgatccgggccggggtttctgccggcttcatc
ggcgcggggctggtcgtggtgctgatgatcgggctttacggcttcttcggcgtgcttgcc
gtgctggcgctgtttgccaatatcgtcatgattattgccatcctgacgctgcttggatcg
acgctgacgctgccgggcatcgccggtatcgtgctgaccatcggcatggctgttgattcc
aacgtgctgatctacgagcgtatccgcgaggaatacaagagcgggcgttccctgatccag
tcgatcgatatcggcttcaacaaggctttggcgaccattgtcgatgccaatgtcacgacg
ctgattgccgctggtgtgttgttcttccttggatccggtccggtgcggggcttctcggtg
acgcttgccatcggtatcatcaccacggtgtttaccgcctttggtttgacccgctggatg
tttaccgtctgggtcaacacgcgccgtcccaaggctcttcccaagggggttcggaccgga
attttcgatggcacgaacatcccgttcatgggtgtccgccgttacacgttcctgctgtcg
gctgccttgtccattgccgcccttgtcggtttcggcacggttggtatgaagctgggtatc
gactttaccggtggttcgatcatcgagttgaaggcgcgccagggcaatgccgatcccgcc
gcgatccgtgaacagttgagcagcctcaatctcggcgatgttcaggtccagggttttggc
gatccgagcagcgttctagtccgtttgcaggcccaggacgaaggggaaaacggcgagcag
tcggctgttgccaaggtgcgcggcgcattggaacaggcttatgagttccgccgcaccgaa
gtcgtcgggccgtccgtgtcgggtgagttgaccaaatcggcaaccatcggcgtgctgatt
tcgctgatggcgatcctggtctatatctggatccggttcgaatggcagtttgcggcaggc
gcgatcattgcaacactgcatgacgtcatcctgacgcttggcctctacgtggtcaccggg
gtggaattcgacctcagcagtattgcggcgatcctgacgattgtcggctattcgctgaac
gataccgtggtcgtctatgaccgcatgcgcgagaacctgcgccgttacaagaaaatgccg
ctggatgtgttgatcgacacgtcgatcaaccagaccctgtctcgtaccatcctgacatcg
gtgacgacgcttctggctcttctggccctgttcctgttcggtggcgaagttatccgctcc
ttcactttcgccatgttgttcggggttctcgttggcacattctcctctatctatatggcg
gcaccggttctgatcgccttccgtctgcgccctgaaggtcagggcgagccggataaggct
gaaaaagcaaagccggaaaagaatggcgcgacgggcaaggcgggagcatag
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