Agrobacterium vitis VAT03-9: RvVAT039_03540
Help
Entry
RvVAT039_03540 CDS
T08809
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoylalanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv00470
D-Amino acid metabolism
avv00550
Peptidoglycan biosynthesis
avv01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RvVAT039_03540 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RvVAT039_03540 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
avv01011
]
RvVAT039_03540 (murD)
Enzymes [BR:
avv01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
RvVAT039_03540 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
avv01011
]
Precursor biosynthesis
Amino acid ligase
RvVAT039_03540 (murD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
MurD-like_N
TrkA_N
NAD_binding_2
2-Hacid_dh_C
NAD_Gly3P_dh_N
FAD_binding_3
ApbA
KARI_N
YjeF_N
Motif
Other DBs
NCBI-ProteinID:
BCH63138
LinkDB
All DBs
Position
1:complement(360043..361458)
Genome browser
AA seq
471 aa
AA seq
DB search
MIPVTSFSDRSVALFGLGGSGLATARALVAGGAAVTVWDDNPDSVEKARAEGLEARDLRQ
IDWSGLSAFVLSPGVPLTHPKPHWTVELAKAAGVEIIGDIELFVRERRAKAPDCPFIAIT
GTNGKSTTTALIGHILRHNGYDVQIGGNIGTAVLTLEPPGPDRYYVVECSSYQIDLAPGI
DPTAGILLNLTPDHLDRHGSMENYAAVKERLVAGSDVAIIGVDDDYCREIATRLEETGKE
VVRISKGQPLTDGLYNDGQRIVRGSGEAAEVIADLNGIATLRGSHNAQNAAAAIAACMAV
GLSKDQIQAGLSSFAGLKHRMQPVGRRGHVVFVNDSKATNAEASAPALSSYERIYWIAGG
LPKQGGIASLSPLFPRIAKAYLIGEAASGFAATLGNAVAYEISGTLDRALAHASADAQDD
GNGGEVAVMLSPACASFDQYKNFEVRGEAFVSLVAGLDDVTMLIQQASGET
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgattccggttaccagcttttccgatcgcagcgtcgccctgttcgggcttggcggctcc
ggccttgccacggctcgcgccctggtggctggtggggcagcggtgacggtctgggatgac
aatcccgacagcgtcgagaaggctcgggcagaagggctggaagcacgggatctgcgccag
atcgactggagcgggctttccgcctttgtcttgtcgccgggcgtgccgctgacccatccg
aaaccgcattggacggtggaactggcaaaggcagcaggcgtcgagatcatcggcgatatc
gagcttttcgtgcgcgagcggcgggcgaaagcgccagattgcccgttcatcgccattacc
ggcaccaatggtaaatcgaccaccacggcgctgattggccatattctgcgccacaacggc
tatgatgtgcagatcggcggcaatatcggcacggcggtgctgaccctggagccgcccggg
cctgatcgttattatgtggtggaatgctcatcctaccagattgatcttgcccccggcatt
gatccaacggcaggcattctcctcaacctcacccccgaccacctcgaccgccacggcagc
atggaaaattatgcggcggtgaaggagcggctggtggcgggtagtgatgtggcaatcatc
ggcgttgatgacgactattgccgggagatcgctacgcgattggaagagacgggcaaagag
gtcgtgcggatttccaagggccagcctttgaccgacggcctttacaatgacggccagcgg
attgtgcgtggctcgggtgaagcggccgaggtgattgccgacctgaacggtatcgccacg
ttgcggggcagccacaatgcccagaacgcggcagctgccattgccgcttgtatggcggtg
ggattgtccaaagaccagattcaggccggattgtcctcctttgcagggttgaagcaccgg
atgcagccggtcgggcggcggggacatgtggtcttcgtcaatgacagcaaggcaaccaat
gccgaggcctctgcaccggccttgtccagttatgagcggatctactggatcgctggtggt
ctgccaaagcagggtggcattgccagcctttcgccgctgtttccgcgcattgccaaggcc
tatctgatcggcgaagcggcgtccggctttgcggctacgcttggcaatgccgttgcttac
gagatttccggtacgctggaccgggcgcttgcccatgccagcgccgatgcgcaagacgat
gggaatggcggcgaggttgccgtgatgctttccccggcttgcgcaagcttcgaccagtac
aagaattttgaagtcaggggcgaagccttcgtttcgctggtagccgggcttgacgatgtg
acgatgctgatccaacaggcttcaggagagacatga
DBGET
integrated database retrieval system
