Agrobacterium vitis VAT03-9: RvVAT039_05190
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Entry
RvVAT039_05190 CDS
T08809
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RvVAT039_05190 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avv03021
]
RvVAT039_05190 (rpoD)
Transcription machinery [BR:
avv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RvVAT039_05190 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF5856
Relaxase_C
Phage_DsbA
Motif
Other DBs
NCBI-ProteinID:
BCH63303
LinkDB
All DBs
Position
1:complement(514697..516742)
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AA seq
681 aa
AA seq
DB search
MATKVKENEEAENERDGATDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTS
EQIEDTMAMLSDMGINVVEDEDAEDPAAEESDNDEEAESEGGELAPAGNTAVATAKKKEP
TDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALIIWRDE
LNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRRVRSSEDDITN
VGGDMQMPEEEEEDEDESNLSLAAMEAELRPQVMETLDLIADTYKKLRKLQDQQVEARLA
CAGTLSSGQERRYKELKDQLITAVKSLSLNQNRIDSLVEQLYDISKRLMQNEGRLLRLAE
SYGVKRDSFLEQYQGAELDPNWMKSVGNLAARGWKDFAREENNTIREIRQEIQNLATETG
ISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL
MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLH
EIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPI
DAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEA
KALRKLKHPSRSRKLRSFLDS
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaggtcaaggaaaacgaagaagccgagaacgagcgcgatggcgcgaccgac
ggtccgcttctcgatctttcggatgacgcggtcaagaaaatgatcaaggccgccaagaag
cgcggctacgtcactatggatgagctgaattcggttctgccatccgaggaagtaacctcg
gagcagatcgaagacaccatggcgatgctttccgacatgggcatcaacgtcgtcgaggac
gaggacgccgaagatccggcggccgaagaaagcgataacgacgaagaagccgaaagcgaa
ggcggcgaactggcgcctgctggcaataccgctgttgccacagccaagaagaaagagccg
accgaccgcacggacgacccggttcgcatgtatctgcgcgaaatgggctcggtggagctg
ttgtcgcgcgaaggcgaaatcgccattgccaagcgcatcgaggctggccgcgaaacgatg
atcgccggtctctgtgagagcccgctgaccttccaggcgctgattatctggcgcgacgag
ctgaacgaaggcacgacgctgctgcgcgagatcatcgatctcgagaccacctattccggt
cccgaggccaaggccgcgccgcaattccagagcccggaaaaaatcgaggcggaccgcaag
gctgccgaggaaaaggaaaagacccgccgggtccgctccagcgaagacgacatcaccaat
gtcggcggcgacatgcagatgccggaagaagaggaagaggacgaagacgagtccaatctt
tcgttggccgccatggaagccgagctgcgtcctcaggtcatggaaaccctcgacctgatc
gctgatacctacaaaaagctgcgcaagttgcaggaccagcaggtggaagcgcgcctggcc
tgtgctggcacgctgtcatccggccaggagcggcgttacaaggaactgaaggatcagctg
atcacggcagtcaaatcgctgtcgctgaaccagaaccgtatcgacagccttgtcgagcag
ctctacgacatttccaagcgcctgatgcagaacgaaggccgcctgttgcggctggctgaa
agctacggcgtcaagcgcgatagcttcctggagcagtatcagggcgcggaacttgatccc
aactggatgaagtcggtcggcaatctggctgcccgcggctggaaggatttcgcccgcgag
gaaaacaacacgatccgggaaatccgtcaggaaatccagaatctggcgaccgagaccggc
atttccatcgccgagttccgccgtatcgtctccatggtgcagaagggcgaacgcgaagcc
cggatcgccaagaaggaaatggtcgaggccaatctgcgtctggttatttcaattgccaag
aaatacaccaatcgcggcctgcaattcctcgacctgatccaggaaggcaatatcggcctg
atgaaggcggtggataagttcgaatatcggcgcggctacaagttctccacctatgcgacg
tggtggatccggcaggcaatcacccgttcgattgccgaccaggcccgcacgatccgtatt
ccggtgcatatgatcgaaacgatcaacaagatcgttcggacatcgcgccagatgctgcac
gaaattggccgcgaaccgacaccggaagaactggctgaaaagctggccatgccgctcgaa
aaagtccgcaaggtgctgaaaatcgccaaggagccgatctcgctcgaaacccccgtgggc
gacgaggaagattcgcatctcggcgacttcatcgaggacaagaacgcgctgctgcccatc
gatgccgccatccaggccaacctgcgcgaaaccaccacccgcgtgctggcctcgctgacg
ccacgcgaagaacgcgtgctgcgcatgcgcttcggcatcggcatgaacaccgaccacacg
ctggaagaagttggtcagcagttctcagttacccgcgaacgtatccgccagatcgaagcc
aaggccctgcgcaagctcaagcatccaagccgctcgcgcaaactgcgcagcttcctggac
agctaa
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integrated database retrieval system
