KEGG   Agrobacterium vitis VAT03-9: RvVAT039_09510
Entry
RvVAT039_09510    CDS       T08809                                 
Symbol
ruvB
Name
(GenBank) Holliday junction ATP-dependent DNA helicase RuvB
  KO
K03551  holliday junction DNA helicase RuvB [EC:5.6.2.4]
Organism
avv  Agrobacterium vitis VAT03-9
Pathway
avv03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:avv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    RvVAT039_09510 (ruvB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:avv03400]
    RvVAT039_09510 (ruvB)
Enzymes [BR:avv01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     RvVAT039_09510 (ruvB)
DNA repair and recombination proteins [BR:avv03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     RvVAT039_09510 (ruvB)
    RecFOR pathway proteins
     RvVAT039_09510 (ruvB)
SSDB
Motif
Pfam: RuvB_N AAA_lid_4 RuvB_C AAA AAA_5 TIP49 Mg_chelatase AAA_22 AAA_3 AAA_14 Rad17 AAA_16 AAA_2 nSTAND3 AAA_18 AAA_17 RNA_helicase AAA_33 TsaE AAA_28 AAA_24 DUF815 NTPase_1 IstB_IS21 Bac_DnaA ABC_tran NB-ARC Cytidylate_kin Sigma54_activ_2 AAA_7 NACHT
Other DBs
NCBI-ProteinID: BCH63735
LinkDB
Position
1:976476..977519
AA seq 347 aa
MSAQNPVLTPEKRGEDVDSALRPQTLDDFTGQAEARANLKIFIEAAKNRGEALDHVLFVG
PPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAV
EEILYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRLS
FYTVEELELIVRRGARLMGLGMTDDGAREIARRARGTPRIAGRLLRRVRDFAEVARAPAV
TREIADEALTRLLVDNMGLDQLDTRYLTMIAVNFGGGPVGIETIAAGLSEPRDAIEDIIE
PYMIQQGFIQRTPRGRVLTAIAWKHLGLMPPKDMEAAQFRLTLEDDD
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgagcgctcaaaaccctgtcctcaccccggaaaagcgcggcgaagacgttgattcggcg
ctcagaccgcagacgctggacgattttaccggccaggcggaggcccgcgccaatctgaag
atcttcatcgaagccgccaagaaccggggcgaggcgctggatcatgtgctgttcgtcggc
ccaccgggcctgggcaagacaacgctggcgcagatcatggccaaggaactgggcgtcaat
ttccgctccacgtccggtcctgtcatcgccaaggcgggggatctcgccgcactcctcacc
aatctggaagagcgcgacgtgctgtttatcgatgaaatccatcgcttgagcccggcggta
gaggaaatcctctatccggcgatggaggatttccaacttgacctgatcatcggcgaaggc
ccggcggcgcgctcggtgaagatcgacctttccaaattcaccctggtcgccgccaccaca
aggcttggcctgctgaccacgccgttgcgcgaccggttcggcattccggtgcggctgtcc
ttctatacggtcgaggagctggagctgatcgtgcggcgcggcgcgcgcctgatggggcta
ggcatgaccgatgacggcgcgcgcgaaattgccaggcgcgcccgcggcacgccgcgcatt
gcaggacggctgctgcgccgggtgcgcgattttgccgaggtcgcccgcgcccctgctgtg
acccgcgagatcgccgatgaggcgctcacgcggttgttagtggacaatatgggccttgat
cagctcgacacccgttatttgaccatgattgccgtcaattttggtgggggtccagtcggc
attgaaaccattgccgcgggcctgtccgaaccgcgcgacgccatcgaggatattatcgag
ccctatatgatccagcagggtttcatccagcgcacgccgcgtggccgcgtgctgaccgcg
attgcctggaaacatctgggcctgatgccgccgaaagacatggaggccgcgcagtttcgc
ctgacccttgaggatgacgattga

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