Agrobacterium vitis VAT03-9: RvVAT039_09510
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Entry
RvVAT039_09510 CDS
T08809
Symbol
ruvB
Name
(GenBank) Holliday junction ATP-dependent DNA helicase RuvB
KO
K03551
holliday junction DNA helicase RuvB [EC:
5.6.2.4
]
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RvVAT039_09510 (ruvB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avv03400
]
RvVAT039_09510 (ruvB)
Enzymes [BR:
avv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RvVAT039_09510 (ruvB)
DNA repair and recombination proteins [BR:
avv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RvVAT039_09510 (ruvB)
RecFOR pathway proteins
RvVAT039_09510 (ruvB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RuvB_N
AAA_lid_4
RuvB_C
AAA
AAA_5
TIP49
Mg_chelatase
AAA_22
AAA_3
AAA_14
Rad17
AAA_16
AAA_2
nSTAND3
AAA_18
AAA_17
RNA_helicase
AAA_33
TsaE
AAA_28
AAA_24
DUF815
NTPase_1
IstB_IS21
Bac_DnaA
ABC_tran
NB-ARC
Cytidylate_kin
Sigma54_activ_2
AAA_7
NACHT
Motif
Other DBs
NCBI-ProteinID:
BCH63735
LinkDB
All DBs
Position
1:976476..977519
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AA seq
347 aa
AA seq
DB search
MSAQNPVLTPEKRGEDVDSALRPQTLDDFTGQAEARANLKIFIEAAKNRGEALDHVLFVG
PPGLGKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAV
EEILYPAMEDFQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRLS
FYTVEELELIVRRGARLMGLGMTDDGAREIARRARGTPRIAGRLLRRVRDFAEVARAPAV
TREIADEALTRLLVDNMGLDQLDTRYLTMIAVNFGGGPVGIETIAAGLSEPRDAIEDIIE
PYMIQQGFIQRTPRGRVLTAIAWKHLGLMPPKDMEAAQFRLTLEDDD
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctcaaaaccctgtcctcaccccggaaaagcgcggcgaagacgttgattcggcg
ctcagaccgcagacgctggacgattttaccggccaggcggaggcccgcgccaatctgaag
atcttcatcgaagccgccaagaaccggggcgaggcgctggatcatgtgctgttcgtcggc
ccaccgggcctgggcaagacaacgctggcgcagatcatggccaaggaactgggcgtcaat
ttccgctccacgtccggtcctgtcatcgccaaggcgggggatctcgccgcactcctcacc
aatctggaagagcgcgacgtgctgtttatcgatgaaatccatcgcttgagcccggcggta
gaggaaatcctctatccggcgatggaggatttccaacttgacctgatcatcggcgaaggc
ccggcggcgcgctcggtgaagatcgacctttccaaattcaccctggtcgccgccaccaca
aggcttggcctgctgaccacgccgttgcgcgaccggttcggcattccggtgcggctgtcc
ttctatacggtcgaggagctggagctgatcgtgcggcgcggcgcgcgcctgatggggcta
ggcatgaccgatgacggcgcgcgcgaaattgccaggcgcgcccgcggcacgccgcgcatt
gcaggacggctgctgcgccgggtgcgcgattttgccgaggtcgcccgcgcccctgctgtg
acccgcgagatcgccgatgaggcgctcacgcggttgttagtggacaatatgggccttgat
cagctcgacacccgttatttgaccatgattgccgtcaattttggtgggggtccagtcggc
attgaaaccattgccgcgggcctgtccgaaccgcgcgacgccatcgaggatattatcgag
ccctatatgatccagcagggtttcatccagcgcacgccgcgtggccgcgtgctgaccgcg
attgcctggaaacatctgggcctgatgccgccgaaagacatggaggccgcgcagtttcgc
ctgacccttgaggatgacgattga
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