Agrobacterium vitis VAT03-9: RvVAT039_10130
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Entry
RvVAT039_10130 CDS
T08809
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
Organism
avv
Agrobacterium vitis VAT03-9
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
HTH_8
AAA_5
HTH_50
AAA
HTH_7
Mg_chelatase
HTH_22
AAA_7
HTH_23
AAA_3
Phage_AlpA
VpsR
RWP-RK
F_bP_aldolase
HTH_29
FleQ
AAA_22
HTH_28
HTH_Tnp_1_2
dnstrm_HI1420
AAA_2
Phage_CP76
Motif
Other DBs
NCBI-ProteinID:
BCH63797
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Position
1:complement(1041588..1043135)
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AA seq
515 aa
AA seq
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MTAHILVVDDDPVQRRLLKAAVESQGHVAHLAEDGEAGLAYFRQHKAEISVILLDLMMPG
VSGLDFLVAIGGQEADVPVIVQTGQGGIDTVVQAMRAGAFDFVVKPVSPERIASAIGNAL
RVDQRDAKSRPARRSRTGAVHFSDIISASPAMTRVIDLSRRAAQSNIPVVLEGESGVGKE
MVARAIQSGSDRASRPFVTVNCAAIPANMVESILFGHEKGSFPGATERHIGKFAEADGGT
LFLDEIGELPLDTQVKLLRAVQEGEIEVIGARQTQKVNVRLISATNKDLIEEVKAGRFRE
DLYYRLNVFPITIPALRRRKEDIPFLARAFTERFSAEQRLTRTLSLGAGALALLTAFDWP
GNIRQLENAIYRAVILAEGTDLTESDFPQILAQIPGGLAQDKFWSGLPGTAESQPEQVAP
RGADRPELAFIDRLPAPRAEDPRPVALDNVIVSIDESGNVRQLAEIEEELIRFALKFYRG
QMSQVARKLGIGRSTLYRKLKDYGIDPDNPQKHAA
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgctcatattctcgttgtcgatgacgatccggttcaacgccggttgttgaaggcc
gctgtggaaagccaggggcatgttgcccatctggccgaggacggagaggcaggccttgcc
tatttccgtcagcacaaggcggagatttccgtcatcctgctcgatttgatgatgccgggc
gtatccggcctcgatttcctggttgccatcggcggtcaggaggcggacgtgcctgtcatc
gtgcagaccggtcagggcggcatcgataccgtggtgcaggccatgcgggctggcgccttc
gatttcgtcgtcaagccggtctcgccggagcgaatcgcatcggccatcggcaatgcactg
cgcgtcgaccagcgcgacgccaagtcgcgtcctgcacgccggtcacgcaccggggcggtg
catttctccgatatcatttcggcaagtccggccatgacccgggtcatcgacctgtcgcgc
cgtgcggcccaatcgaatatccctgtcgtgctggaaggcgaatcgggcgttggcaaggaa
atggtcgcccgggctatccagtcgggcagcgaccgtgcgtcgcggccttttgtcacggtc
aattgcgctgccattcccgccaatatggtggaaagcattctgttcggccatgaaaaggga
tctttccccggtgccacggaacgccatatcggcaagttcgccgaggctgacggcggcacg
ctgttcctcgacgagatcggcgaattgccgctcgacacgcaggtgaagctgctgcgggcc
gtgcaagaaggcgaaatcgaggttatcggcgcccgccagacccagaaggtcaatgtgcgg
ctgatctcggcgaccaacaaggatctgatcgaagaggtcaaggctggccggttccgcgag
gacctttattaccgcctcaacgtcttccccatcaccattccggctctgcgccgccgcaag
gaggacattcccttcctggcgcgcgcctttaccgaacggttctcggcagagcagcgtctg
acccggaccctgtctctgggggctggcgcacttgcattgctgacggccttcgattggccc
ggcaatattcgccagctggaaaatgccatctaccgggcggtgattcttgccgaaggtacg
gatctgacggaaagcgatttcccgcagatcctggcacagatcccaggcggtttggcgcag
gacaagttctggtcgggtctgcctggcacggccgaaagccagccggaacaggtggcgccg
cgcggtgcagaccggccggaactggcctttatcgaccggctacctgccccccgcgccgag
gacccgcgtccggtggcgttggacaatgtcatcgtcagcatcgacgagagcggcaatgtc
cggcaattggctgagatcgaggaagaattgattcgtttcgcgctgaaattctaccgaggc
cagatgagccaggtggcacgcaagcttggaatcggtcgctcaacactctatcgcaaactg
aaggattacgggatcgacccggataatccgcagaagcacgccgcctga
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