Agrobacterium vitis VAT03-9: RvVAT039_14550
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Entry
RvVAT039_14550 CDS
T08809
Symbol
sdhB
Name
(GenBank) succinate dehydrogenase iron-sulfur subunit
KO
K00240
succinate dehydrogenase iron-sulfur subunit [EC:
1.3.5.1
]
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv00020
Citrate cycle (TCA cycle)
avv00190
Oxidative phosphorylation
avv00650
Butanoate metabolism
avv01100
Metabolic pathways
avv01110
Biosynthesis of secondary metabolites
avv01120
Microbial metabolism in diverse environments
avv01200
Carbon metabolism
Module
avv_M00009
Citrate cycle (TCA cycle, Krebs cycle)
avv_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
avv_M00149
Succinate dehydrogenase, prokaryotes
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
RvVAT039_14550 (sdhB)
00650 Butanoate metabolism
RvVAT039_14550 (sdhB)
09102 Energy metabolism
00190 Oxidative phosphorylation
RvVAT039_14550 (sdhB)
Enzymes [BR:
avv01000
]
1. Oxidoreductases
1.3 Acting on the CH-CH group of donors
1.3.5 With a quinone or related compound as acceptor
1.3.5.1 succinate dehydrogenase
RvVAT039_14550 (sdhB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fer2_3
Fer4_17
Fer4_8
Fer4_10
Fer4_7
Fer2
Fer4_9
Fer4_18
Motif
Other DBs
NCBI-ProteinID:
BCH64239
LinkDB
All DBs
Position
1:complement(1579348..1580127)
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AA seq
259 aa
AA seq
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MVELTLPKNSQIKPGKVWPKPSGAKNLREYQIYRWSPDDDKNPSLDTYYVDMDDCGPMVL
DGLLYIKNKIDPTLTFRRSCREGICGSCAMNIDGTNTLACTKGTDEVKGTVKVYPLPHMP
VVKDLVPDLTNFYAQHRSIEPWLKTVSPTPVKEWKQSHDDRQKLDGLYECILCACCSTSC
PSYWWNGDRYLGPAVLLQAYRWLIDSRDEAKGERLDNLEDPFRLYRCHTIMNCAQVCPKG
LNPAKAIAEIKKMMVERRV
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atggttgaactgacgcttcccaagaattctcagatcaagccgggcaaggtctggccaaag
ccttcaggtgccaagaacctgcgggaataccagatctatcgctggagccccgatgacgac
aaaaatccaagcctcgacacctattatgtcgatatggacgattgcggtccgatggttctc
gacggtcttctctatatcaagaacaagatcgatccgacgctgacgttccgccggtcctgt
cgtgagggcatttgcggctcctgcgcgatgaatatcgatggcaccaacacgctggcctgc
accaaggggaccgacgaggtgaaggggaccgtgaaggtctatcctctgccgcatatgcct
gtggtcaaggatctagttcccgacctgaccaacttctatgcccagcaccgctccatcgaa
ccctggctgaaaacggtgtctccgacgccggttaaggaatggaagcagagccatgacgac
cggcagaagctggacggcctttatgagtgcattctgtgcgcttgctgctcgacgtcttgc
ccgagctattggtggaatggcgaccgctatcttggccccgccgtgctgctgcaagcctat
cgctggttgatcgacagccgtgacgaggccaagggcgagcgactggataatctggaagat
cccttccggctctatcgctgccatacgatcatgaattgcgcgcaagtctgtccaaagggc
ctcaatccggccaaggcgattgccgaaatcaagaaaatgatggtcgagcgccgcgtttga
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