Agrobacterium vitis VAT03-9: RvVAT039_14910
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Entry
RvVAT039_14910 CDS
T08809
Symbol
ligT
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
avv
Agrobacterium vitis VAT03-9
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
avv03016
]
RvVAT039_14910 (ligT)
Enzymes [BR:
avv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
RvVAT039_14910 (ligT)
Transfer RNA biogenesis [BR:
avv03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
RvVAT039_14910 (ligT)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
BCH64275
UniProt:
A0AAE2RJP0
LinkDB
All DBs
Position
1:complement(1611370..1611957)
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AA seq
195 aa
AA seq
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MPRLFTALEIPRNVALSLSLLRGGLPGARWIDVENYHITLRFIGDIDGRTADEIVDRLDR
IDRPEFQLSLNGIGSFGSKKPHSIWAGVTPHPQMTALQGEIERICQRVGLPPDPRKFMPH
VTLARLKSSRLDDVVHYLSGRGNFQTAPFFVPRFVLMSSKESVGGGPYLKEEIFPLYEER
SEVSFSEHAEHSLNG
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atgccgagattgttcactgccctcgaaattccgcgcaacgtggccttgagcctgtctttg
ctgcgcggcgggcttccgggagcccgatggatcgatgtggaaaattaccacatcaccctt
cggttcataggcgatatcgacgggcgaaccgccgatgagatcgtcgataggctggatcgc
atcgaccggccggaattccagctcagtctgaacggcatcgggtccttcgggtcgaaaaaa
ccgcattccatctgggcaggtgttacgccacatccgcagatgacggcgcttcagggcgaa
atagagcggatctgccaacgcgtggggctgccacccgacccccgaaagtttatgccgcat
gtgacactggcgcggctgaagtcatcgagactggatgacgttgttcattatttatcaggg
cgcggtaatttccagaccgcgccctttttcgttccaagattcgtgctgatgtcctccaag
gaatcggtggggggtggcccttatctaaaggaggaaatcttccccctctatgaagagcgc
tcagaggtcagtttttcagagcatgccgagcattcgctgaacggataa
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