Agrobacterium vitis VAT03-9: RvVAT039_15120
Help
Entry
RvVAT039_15120 CDS
T08809
Symbol
ffh
Name
(GenBank) signal recognition particle protein
KO
K03106
signal recognition particle subunit SRP54 [EC:
3.6.5.4
]
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv02024
Quorum sensing
avv03060
Protein export
avv03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03060 Protein export
RvVAT039_15120 (ffh)
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
RvVAT039_15120 (ffh)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RvVAT039_15120 (ffh)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
avv02044
]
RvVAT039_15120 (ffh)
Enzymes [BR:
avv01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.5 Acting on GTP to facilitate cellular and subcellular movement
3.6.5.4 signal-recognition-particle GTPase
RvVAT039_15120 (ffh)
Secretion system [BR:
avv02044
]
Sec (secretion) system
Prokaryotic Sec-SRP core components
RvVAT039_15120 (ffh)
Eukaryotic Sec-SRP protein
RvVAT039_15120 (ffh)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SRP54
SRP_SPB
SRP54_N
CbiA
Zeta_toxin
AAA_33
AAA_30
AAA_22
AAA_19
DnaB_C
AAA_14
AAA_31
APS_kinase
6PF2K
AAA_18
Thymidylate_kin
AAA
AAA_16
ArsA_ATPase
Motif
Other DBs
NCBI-ProteinID:
BCH64296
LinkDB
All DBs
Position
1:1632548..1634110
Genome browser
AA seq
520 aa
AA seq
DB search
MFENLQDRLGSILNGLTGRGALSEADVSAALREVRRALLEADVALEVVRSFTDKVREKAV
GAAVLKAIKPGQMVVKIVHDELVDMLGAEGVSIDLHAPAPVVIMMVGLQGSGKTTTTGKI
AKRLTDRDRKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLPIIAGQSPTDIASRAVQAAK
LGGHDVVILDTAGRTHIDEPLMVEMADIKKNAKPHEILLVADALTGQDAVNLARNFDERV
GITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGVGEKMTELDEFHPRRIADRILGMGDI
VSLVEKAAENIDAEKAAAMAAKMAKGKFDLDDLADQLRQMQKMGGMGGIMGLMPGMAGMK
DKMAASGMDDKMFGRQIAIISSMTKAERTNPDILKHSRKKRIAKGSGTDASEINKLLKMH
RQMADMMKMMGGKKGGGMMKQLMGGLAGKMGMGGMGGMPDLSSMDPKQLEALARQAEAAG
IKPPPGLGGSMGGGLPGLGGGKLPGLGGGFPGLPGLPKKK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgtttgagaacctgcaggaccgccttggctccatcttgaatggactgaccggccgtggc
gcgttgtcggaagccgatgtttccgccgccctgcgggaggttcgccgcgccctgctggaa
gccgacgtcgccttggaagtggtgcgcagctttaccgacaaggtgcgggaaaaggcggtt
ggtgccgccgttctgaaagccatcaagcctggccagatggtcgtcaagatcgtccatgac
gagctggtggacatgctgggcgctgagggcgtctccatcgatctgcacgcaccggccccg
gttgtcatcatgatggtcggcctccaaggctcgggcaagaccacgacgaccggcaagatc
gccaaacggttgaccgaccgcgatcgcaagaaggtcctgatggcctcgctggacacccgc
cgtcccgccgcccaggaacaattgcggcaattgggcgtgcagaccggcgtcgacacgctg
ccaatcattgccggccagtcaccgaccgatattgccagccgcgccgtgcaggccgccaag
ctaggcggccatgacgtggtcattctcgataccgcaggccgtacccatatcgacgagccc
ttgatggtcgaaatggccgacatcaagaagaatgcaaagccgcacgaaattctgctggtt
gccgatgcgctgaccggtcaggacgccgtcaatctcgcccgcaatttcgatgagcgcgtc
ggcattaccggcctggtcctgacccgtatggacggcgatggtcgcggcggcgcggcccta
tccatgcgcgccgtcaccggcaagccgatcaagctgatcggcgtcggcgaaaagatgacg
gagctggatgaatttcatccgcgccggatcgccgaccgtattctcggcatgggcgatatc
gtttcgctggtcgaaaaggccgctgaaaatattgacgccgaaaaggccgccgccatggcc
gccaagatggccaagggcaagttcgatctcgacgacctcgccgaccagctgcgccagatg
cagaaaatgggcggcatgggcggcattatgggcctgatgcccggcatggccggaatgaag
gacaagatggccgcctcaggcatggacgacaagatgttcggtcgccagatcgccatcatc
tcgtcgatgaccaaggccgagcgcaccaatcccgacattctcaagcattcccgcaagaag
cgcattgccaagggctccggcaccgatgcgtccgagatcaacaagcttttgaaaatgcac
cgccagatggccgacatgatgaaaatgatgggcggcaagaagggcggcggcatgatgaag
cagctgatgggcggtctggccggcaagatgggcatgggtggaatgggtggcatgccggat
ctcagctccatggaccccaagcagctcgaagcgctggcacgccaggctgaagccgccggt
atcaagccgcctccgggcctgggtggtagcatgggtggcggccttcccggcttgggtggt
ggaaaattgcccggtcttggtggaggcttcccaggccttcccggtctcccaaagaagaag
tga
DBGET
integrated database retrieval system
