Agrobacterium vitis VAT03-9: RvVAT039_16630
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Entry
RvVAT039_16630 CDS
T08809
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RvVAT039_16630 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avv03021
]
RvVAT039_16630 (rho)
03019 Messenger RNA biogenesis [BR:
avv03019
]
RvVAT039_16630 (rho)
Transcription machinery [BR:
avv03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
RvVAT039_16630 (rho)
Messenger RNA biogenesis [BR:
avv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RvVAT039_16630 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
OB_RNB
AAA_25
NACHT
S1CSD-TOTE-2
AAA
DUF6360
Motif
Other DBs
NCBI-ProteinID:
BCH64447
LinkDB
All DBs
Position
1:complement(1816364..1817641)
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AA seq
425 aa
AA seq
DB search
MVPFMAEMKLQELKSKSPTDLLAFAESLEVENASTMRKQELMFAILKMLASQDVEIIGEG
VVEVLQDGFGFMRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFAL
LKVNTINFEDPEKIRHKVHFDNLTPLYPNERFKMELEIPTSKDLSSRVIDLVAPLGKGQR
GLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVVSSTFD
EPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANA
LQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKR
IFPSMDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTDAIEFLIDKLKQTKTNGDFF
ESMNT
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggtccccttcatggctgaaatgaagctacaagaactcaagagcaaatcgccaaccgat
ctgctggcctttgcggaatcgcttgaggtcgaaaatgccagcacgatgcgcaaacaggaa
ttgatgtttgccattttgaaaatgctggccagccaggatgtcgaaatcattggtgaaggc
gttgtcgaagtcctgcaggatggttttgggttcatgcgttcggccaatgccaactatttg
ccgggtccggacgacatctacatttcgccgtcgcagatccgccggttttcgctgaagacc
ggcgataccgtcgaaggtccgatccgcggacccaaggaaggcgagcgctatttcgcgctg
ctgaaagtcaatacgatcaatttcgaggacccggaaaagatccgccataaggttcacttc
gataacctgacgccgctctacccgaatgagcggttcaagatggaactggagattccaact
tccaaggatctttcctcccgggtcatcgatctggttgcaccgcttggcaaaggccagcgt
ggcttgatcgtcgcgccgccgcggactggtaaaaccgtcctgctccagaatatcgctcat
tccattaccgccaaccatccggaatgctatctgatcgttcttctgatcgatgaacgtcct
gaagaagtgacggatatgcagcgctccgtgcggggcgaagtcgtttcatcgacctttgac
gaaccggccgtgcgccacgtccaggtcgcggaaatggtcattgagaaggccaaacggttg
gttgagcacggtcgtgacgttgtcatcctgctcgattccattacccgccttggccgcgcc
tataacactgtcgttccgtcttctggcaaggtcctgacgggtggtgtggatgccaatgcg
ctgcaacgccccaagcgcttcttcggcgcagcgcgtaatatcgaagaaggtggttcgctg
acgattattgcaacggcattgatcgataccggcagccgtatggacgaagtgatctttgaa
gagttcaaaggcaccggcaattccgaaattgtgcttgaccgcaaggttgccgacaagcgt
atcttcccgtccatggatattctgaaatccggaacgcgcaaagaagacctgcttgtgccg
cgtcaggatctgcagaagatctttgttcttcgccggattcttgctccaatgggaacaacc
gacgctatcgaattcctgatcgacaaattgaaacagacgaagaccaatggcgacttcttc
gaatcgatgaatacctga
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