Agrobacterium vitis VAT03-9: RvVAT039_17630
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Entry
RvVAT039_17630 CDS
T08809
Symbol
rnd_1
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
avv
Agrobacterium vitis VAT03-9
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
avv03016
]
RvVAT039_17630 (rnd_1)
Enzymes [BR:
avv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
RvVAT039_17630 (rnd_1)
Transfer RNA biogenesis [BR:
avv03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RvVAT039_17630 (rnd_1)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
BCH64547
UniProt:
A0AAE4WNQ5
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All DBs
Position
1:complement(1932844..1933470)
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AA seq
208 aa
AA seq
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MASTIRYHEGDISSEDAARYTRAIAIDTETLGLIPRRDRLCVVQLSPGDGTADVIRIAPG
QRQAPNLTALLEDPTREKIFHYGRFDIAVLFHTFGVTTTPVFCTKIASRLSRTYTDRHGL
KDNLKEMLDVDVSKAQQSSDWAAETLSPAQLEYAASDVLYLHALRDKLTARLVRDGRMDH
ATACFEFLPTRAKLDLLGWEETDIFAHS
NT seq
627 nt
NT seq
+upstream
nt +downstream
nt
atggcttccaccattcgctaccatgaaggcgatatcagcagcgaagacgcggcgcgctat
acccgcgccatcgccatcgacaccgaaacgctggggcttatcccccgccgcgaccggctc
tgcgtggtgcagctttcgccgggtgacggcacagccgacgtcattcgcattgcgccgggc
cagcgccaggcccccaacctgaccgccctgctggaagacccgacccgggaaaaaatcttc
cattatggccggttcgacatcgccgtgctgttccatacgtttggcgtgaccaccacgccg
gtgttctgcacgaaaatcgcctcgcgcctatcgcgcacctataccgaccggcatgggttg
aaggacaacctcaaggaaatgctggatgtggatgtgtccaaggcccagcaatcctcggac
tgggcggcggaaacgctgtctccggcgcagctcgaatatgccgcctccgacgtgctctat
ctgcatgcgctgcgcgacaagctgaccgcccggctggtgcgcgatggccgcatggaccat
gccaccgcctgctttgagttcctgccgacccgggccaagctggacctgctgggctgggaa
gagaccgatattttcgcccatagctga
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