Agrobacterium vitis VAT03-9: RvVAT039_18020
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Entry
RvVAT039_18020 CDS
T08809
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
avv
Agrobacterium vitis VAT03-9
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
avv03016
]
RvVAT039_18020 (truB)
Enzymes [BR:
avv01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
RvVAT039_18020 (truB)
Transfer RNA biogenesis [BR:
avv03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
RvVAT039_18020 (truB)
Prokaryotic type
RvVAT039_18020 (truB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB_C
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
BCH64586
LinkDB
All DBs
Position
1:1980138..1981067
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AA seq
309 aa
AA seq
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MSKPRKPKGRPVSGWLILDKPVDYGSTEAVGKIKWLFNAQKAGHAGTLDPLASGMLPIAL
GDATKTVPYVMDGRKIYEFTVTWGEERSTDDLEGEATQTSDQRPTEEQIRALLPDYTGVI
NQIPPQFSAIKIAGERAYDLAREGEVVDIPSREVEIHRLTLLKADLGCAYFEVECGKGTY
VRSLARDMGRDLGCYGHISELRRSFVAPFAEDMMVPLEDLVELEKIEDRDERLAALDAFL
FDTGEALMALPQIRISDDQAHRLRMGNPIILRGRDAPVAEPEAVALAGGKLVAIGEIGEG
EFRPKRVFA
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaacccagaaaacccaagggccgtccggtttccggctggctgatcctcgacaag
ccggtcgattacggctcgaccgaggccgtcggcaagatcaagtggctgttcaatgcccag
aaagctggtcacgccggaacgcttgatccgctggcctccggcatgttgccgattgcgctg
ggcgatgccaccaagacggttccctatgtcatggatggccgcaagatttacgaatttacc
gtcacctggggcgaagaacgctcgaccgacgatcttgaaggtgaggcaacccaaacctcc
gaccagcgtccgaccgaagaacagatccgcgcccttttgccggattataccggggtgatc
aaccagatccccccgcagttttcggccatcaagattgccggggagcgcgcttatgatctg
gcccgtgaaggcgaggtggtcgatattccctcccgcgaggtggaaatccatcggctgacc
ttgctgaaggctgaccttggctgcgcttatttcgaggtagaatgcggcaagggcacctat
gtgcgctcgctggcgcgcgatatgggccgggatcttggctgctacgggcatatttcggag
ctgcgacgctctttcgtcgcgccgtttgccgaagacatgatggtgccgctggaagatctg
gtggaactggaaaagatcgaggatcgtgacgagcggctggcagccctggatgctttcctg
ttcgataccggcgaggcgctgatggccctgccgcagatccggatcagcgacgatcaggcc
caccggttgcggatgggcaatccgattatcctgcggggccgggatgcgccggtagccgaa
ccggaagcagtggcactggccggtggcaagctggtggcgatcggcgagatcggcgagggc
gagtttcggccgaagcgggttttcgcctga
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