Agrobacterium vitis VAT03-9: RvVAT039_18950
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Entry
RvVAT039_18950 CDS
T08809
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv03030
DNA replication
avv03410
Base excision repair
avv03420
Nucleotide excision repair
avv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RvVAT039_18950 (polA)
03410 Base excision repair
RvVAT039_18950 (polA)
03420 Nucleotide excision repair
RvVAT039_18950 (polA)
03440 Homologous recombination
RvVAT039_18950 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avv03032
]
RvVAT039_18950 (polA)
03400 DNA repair and recombination proteins [BR:
avv03400
]
RvVAT039_18950 (polA)
Enzymes [BR:
avv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RvVAT039_18950 (polA)
DNA replication proteins [BR:
avv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RvVAT039_18950 (polA)
DNA repair and recombination proteins [BR:
avv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
RvVAT039_18950 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RvVAT039_18950 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
HHH_2
HHH
IMS_HHH
Transposase_20
NYN_YacP
Motif
Other DBs
NCBI-ProteinID:
BCH64679
UniProt:
A0AAN1WZY0
LinkDB
All DBs
Position
1:complement(2072329..2075307)
Genome browser
AA seq
992 aa
AA seq
DB search
MKKGDHLFLVDGSGFIFRAFHALPALTRKSDGLPVGAVSGFCNMMWKLLTEARDTSVGVT
PTHLAVIFDYSSKTFRKDLYPEYKANRSAPPEDLVPQFGLIRQATRAFNLPCIETEGFEA
DDIIATYARAAEAIGADVTIVSSDKDLMQLVTANVHMYDSMKDKQIGIPDVIEKWGVPPE
KMIDLQSLTGDSTDNIPGIPGIGPKTAAQLLEEYGDLETLMARASEIKQNKRRENILAGA
ELVKLSRQLVTLRTDVPLDMPLDALMLEKQDGPKLVAFLKAMEFTSLTRRVADNCECDAG
AIEPATISVEWGSAARGPDLDAGAAAQTPASGQESEPTAQSAKAEGATPADLAAARQSAF
GGQPIDRSAYVTIRDLPTLEGWIASAREAGFVAFDTETTSLDPMQADLVGVSLALQDNAA
SPGAATIRAAYVPLGHKTGRDDLFSDGLKLAENQIPMDAALAALKGLLEDPSVLKVAQNL
KYDYLVMKRHGIVIRGFDDTMLLSYVLEAGVGAHGMDSLSERWLGHTPIPYKEVAGSGKS
LVTFDLVDIDKATAYAAEDADVTLRLWLVLKPRLAAVGLTRVYERLERPLVPVLAEMEER
GITIDRQILSRLSGELAQKAAAFEDEIYELAGERFNVGSPKQLGDILFGRMNLPGGSKTK
TGQWSTSAQVLEDLAAQGEPLPRKIVDWRQLTKLKSTYTDALPGYVHPQTKRVHTSYSMA
ATTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRVLAHVADIPQ
LRQAFADGVDIHAMTASEMFGVPVDGMPSEVRRRAKAINFGIIYGISAFGLANQLSIERS
EAGEYIKKYFERFPGIKDYMESTKAFVREHGYVETIFGRRAHYPEIKSSNPSMRAFNERA
AINAPIQGSAADVIRRAMVQVEPALAKAGLGDKTRMLLQVHDELIFEVEDEAIEAALPVI
VSTMENAAMPAIAMRVPLKVDARAADNWDEAH
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaggcgatcatctctttcttgtcgacggctccggcttcatcttccgggccttc
catgcgcttccggcgctgacccgcaaatcggacggactgccggtcggcgcggtctcaggc
ttctgcaatatgatgtggaagcttctgaccgaagcgcgcgacacgtcagtcggcgtcaca
cccacccatctggcggtgattttcgactattcgtcgaaaaccttccgcaaggatctctat
cccgaatacaaggccaatcgctccgccccgccggaagatctggtgccgcaattcgggctg
atccgccaggcgacgcgggccttcaatctgccctgcatcgagaccgagggtttcgaggcc
gatgacattatcgccacctatgcgagggctgcggaagccatcggcgcggatgtcaccatc
gtctcttccgacaaggacctgatgcagttggtgactgccaatgtccatatgtatgacagc
atgaaggacaagcagatcggcattcccgatgtcatcgaaaaatggggtgtaccgccggaa
aagatgatcgacctgcaatcgctgaccggcgacagcaccgataacattcccggcattccc
ggcatcggcccgaagacggcggcgcagctgctagaggaatatggcgacctggaaacgctg
atggcgcgggcctcagagatcaagcagaacaagcggcgcgaaaacattctggcaggtgcc
gaactggtcaagttgtcacggcaactggtgacgctgcgcaccgacgtgccgctggacatg
ccgctggatgcgctgatgctggaaaagcaggatggaccaaagctggtcgccttcctgaag
gccatggaattcacctcgctgacacggcgcgtcgccgacaattgcgagtgtgatgccggc
gccatcgaacccgccacgatctcggtggaatggggttcggcagcccgtggcccggacctc
gacgctggtgccgcagctcaaacgccagcctccggccaagaatcagaacccacggcacaa
tccgccaaggccgagggcgcgacgcctgccgatctcgccgcggcccggcaatcggccttt
ggtggccagcccatcgaccgatccgcctatgtgaccatccgcgatcttcctaccctggaa
ggctggattgcctcggcgcgggaggccgggtttgtcgccttcgatacggaaaccacctcg
cttgacccgatgcaggctgatctggtcggtgtgtcgctggcccttcaggataatgcggcc
tcgccgggcgcagcaaccattcgcgccgcctatgtgccgcttggccacaagaccgggcga
gatgacctgttcagcgacggcctgaaactggcggaaaaccagatcccaatggatgcggca
ctcgccgccctgaagggcctgctggaagatccttcggttctgaaagtggcgcagaacctg
aaatacgattaccttgtcatgaagcggcacggcattgtaatcaggggcttcgacgatacg
atgctgctgtcctatgtgctggaagctggcgtcggcgcacatggcatggacagcctgtcg
gagcggtggctcggacatacgccaatcccctataaggaggttgctggctccggcaaatcg
cttgtcaccttcgatctcgtcgatatcgacaaggcgaccgcctacgccgccgaggatgcc
gacgtcacgctgcgtctctggctggtgctgaaaccacggcttgccgccgtcggcttgacg
cgggtctacgagcggctggagcggcccctggtgccggtcctggccgagatggaagagcgc
ggcatcaccatcgaccggcagatcctctcgcggctatcaggcgagttggcgcagaaggct
gccgccttcgaggacgaaatttacgaattggctggcgagcgcttcaatgtcggctcgccc
aaacagcttggcgacatcctgtttggcaggatgaaccttcccggcggttcgaaaaccaag
accggtcaatggtcaacctccgcgcaggtgctggaagatctggccgcccagggtgagccc
ctgccccgcaagatcgtcgattggcgccagctgaccaagctgaaatccacctatactgac
gccctgcccggctatgttcacccgcagaccaagcgggtccacacgtcttattcgatggcg
gccaccacaaccggtcgcctgtcgtcatccgagccgaacctgcaaaatattccggtgcgc
acggcagaaggccgcaagatccgcaccgccttcatttccaccccaggccataagctgctg
tctgccgactatagccagatcgagctgcgggtactggcccatgtggcggacattccgcaa
ttgcgtcaagcctttgccgacggggtcgatatccatgcgatgacggcctctgaaatgttc
ggcgtgccggtggacggcatgccatctgaagtccgccgccgcgccaaggcgatcaatttc
gggatcatctacggcatttccgccttcgggcttgccaaccagctcagcatcgagcggtcg
gaggcaggcgaatacatcaagaaatatttcgagcgcttccccggcatcaaggactatatg
gaaagcaccaaggccttcgtgcgtgaacatggctatgtcgaaaccattttcggtcggcgc
gcccattacccggagatcaaatcctccaacccgtcaatgcgggccttcaacgagcgggca
gccatcaatgcgccaatccagggttccgccgccgatgtcatccgccgcgccatggtgcag
gtggaaccggcgctggccaaggccgggcttggcgacaaaacccggatgctgctccaagtg
catgacgaactgatcttcgaagtcgaggatgaggccatcgaggctgccttgccggtgatc
gtctccaccatggaaaatgccgccatgcccgccatcgccatgcgcgtcccactcaaagtc
gatgcccgcgccgccgataattgggacgaggcgcattaa
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