Agrobacterium vitis VAT03-9: RvVAT039_19970
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Entry
RvVAT039_19970 CDS
T08809
Symbol
mutS
Name
(GenBank) DNA mismatch repair protein MutS
KO
K03555
DNA mismatch repair protein MutS
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
RvVAT039_19970 (mutS)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avv03400
]
RvVAT039_19970 (mutS)
DNA repair and recombination proteins [BR:
avv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
RvVAT039_19970 (mutS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_I
MutS_III
MutS_II
MutS_IV
Motif
Other DBs
NCBI-ProteinID:
BCH64781
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All DBs
Position
1:2177797..2180532
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AA seq
911 aa
AA seq
DB search
MIIDKAAEPDVLNTAALTSQESRATATPMMEQYIEIKANNPGSLLFYRMGDFYELFFEDA
VEASRALGITLTKRGQHLGQDIPMCGVPVHASDDYLQKLITLGFRVAVCEQVEDPAEAKK
RGSKSVVKRDVVRLVTPGTLTEEKLLSPSETNYLMALARVRGSGDELALAWIDISTGVFR
LAETNPTRLLADIFRIDPREVIVAETLMQDPDLKPAFDVLGRVVVPQPSVLFDSASAEGR
ITRYFNVKTLDGFGGFSRPEMAAASAAIAYVEKTQMSERPPLGLPERQSSSSTLFIDAAT
RANLELVKTLSGQKQGSLLNTIDRTVTGGGARLMAERLMSPLTEVVAIAQRQDAVAYLLT
DGFLCERLRDLLKRAPDMPRALSRLALDRGGPRDLAAIRYGLSTSGDVAGLLRGAVLPDE
LASALTDLEMLSPSLENLLASQLAEDLPLLKRDGGFLREGADEGLDEVRALRDQSRRVIA
GLQLQYAEETGVKSLKIKHNNVLGYFIEVTAGNAGPLIEGEAKARFIHRQSMANAMRFTT
TELADLESRIANAAGQALEIELAAFERMRQAVVTEAEAIKKAARALAVIDVAAGLAVLAE
EQGYCRPLVDDSRMFSIVAGRHPVVEQALRKQAASPFIANNCDLSPVGDQKHGAIWMLTG
PNMGGKSTFLRQNALIAILAQMGSFVPAGSAHIGIVDRLFSRVGASDDLARGRSTFMVEM
VETAAILNQAGERSLVILDEIGRGTATFDGLSIAWATVEHLHEVNRCRSLFATHFHELTA
LSEKLVRLSNVTMKVKEWHGDVIFLHEVGAGAADRSYGIQVARLAGLPGMVVERARAVLS
QLEDADRKNPASQLIDDLPLFQVSQRRESRTGTGAQVSAVEEALRSLNLDDLTPRQAMDA
LYDLKTTLAKS
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
gtgatcatcgacaaagctgccgaaccggatgtgctcaacaccgccgccctgacgtcgcaa
gaaagccgcgcaacggcaaccccgatgatggaacagtatattgaaatcaaggcgaacaat
cccggttcgctgctgttttaccggatgggcgatttctatgagctgtttttcgaggacgcc
gtcgaggcgtcccgggcgctcggcatcaccctgaccaagcgcgggcagcatctgggtcaa
gacattccgatgtgcggtgtccctgtacatgcctctgacgattatctgcaaaagctgatc
acgctcgggttccgtgtcgccgtttgcgaacaggtggaagacccggctgaggcaaagaag
cgcggctccaaatccgtggtcaagcgtgacgtggtacgtctggtcacgcccggaacgctg
acggaagaaaagctgctgtcgccgtcggagaccaattatctgatggcgctggcacgggtg
cgcggcagcggcgatgaactggcgctggcctggatcgatatttccaccggcgttttccgt
ctggcagaaaccaatcccacccgtctgctggcggatattttccgcatcgatccgcgtgaa
gtgatcgtcgccgaaaccctgatgcaggacccggacctcaagccggccttcgatgtgctt
ggccgcgtggtcgtgccgcagccatcggtgctgttcgatagcgcttcggcggaggggcgc
atcacgcgctatttcaacgtcaagacgctcgatggtttcggcgggttttcacggccggaa
atggccgcggcttcggcggcgattgcctatgtggaaaaaacccagatgtccgagcgtccg
ccgcttgggttgcctgagcggcaatcctcgtcctcgacgctgtttattgacgcggccacc
cgcgccaatctggaattggtgaagaccctttccggccagaaacagggttccctgctcaac
accattgaccgaaccgtaaccgggggcggcgcgcggctgatggccgaacggctgatgtcg
cctttgacggaggttgtggcaattgcgcagcggcaggatgcggttgcctatctgttgacg
gacggttttctgtgtgaacggctgcgcgaccttttgaaacgtgccccggatatgccgcgt
gccctgtcgcggctggcgctcgaccggggcgggccaagagatctggcggcgatccggtat
gggttgtccacatcaggcgatgtggctgggttgctgcggggggctgtcctgccggatgag
cttgcctcggcgctcactgatctcgaaatgctgtcgccgtcgctcgaaaatctgctggcc
tcgcaactggcggaagatctgccattgttgaaacgcgatggcgggtttttgagagagggc
gccgatgaggggctggacgaggtgcgggcgctgcgtgaccagtcgcgccgggtgatcgcc
gggctgcaattgcaatatgccgaggaaaccggtgtcaagtcgctgaagatcaagcataac
aatgtgctgggctatttcatcgaagtcaccgccggcaatgccgggccgctgatcgagggt
gaggcgaaggcccgctttatccatcgccagtcgatggccaatgccatgcgctttaccacg
accgaactggctgatcttgaaagccggattgccaatgcggcgggacaggcgctggaaatc
gagcttgcggcgtttgagcgaatgcgccaggcggtggtgaccgaggccgaggccatcaag
aaagcggcgcgggcgctggcggtgatcgatgtggccgccggtcttgccgtcctggccgag
gagcagggctattgcaggcccctggtcgatgacagcaggatgttttccattgtcgccggg
cgtcatcccgtggtcgagcaggccttgcgcaaacaggcggccagccctttcatcgccaat
aattgcgatctttcaccggtaggcgatcagaagcacggggcgatctggatgctgaccggt
ccgaacatgggcggtaaatccacctttctgcgccagaatgcgctgatcgccattctcgcc
cagatggggtcgttcgtgcccgccgggtcggcgcatatcggcattgtcgatcggctgttt
tcccgcgttggcgcctccgacgatctggcgcggggccgttcgaccttcatggtcgagatg
gtagagacggcggccattctcaatcaggcgggcgagcggtctctggtcattctcgatgag
attggccgtggtacggcgacgttcgacggcctgtcgattgcctgggcgactgtcgagcat
ctgcatgaggtcaatcgctgccggtcgttgtttgccacgcattttcacgagttgacggcg
ctgtctgaaaagcttgtccggctgtcgaacgtcactatgaaagtcaaggaatggcacggc
gacgtgattttcctgcatgaggttggggccggtgccgctgaccgttcctacggcatccag
gtggcgcgactggccgggctgccgggcatggtggtggagcgcgcccgcgccgtgttgtcg
cagctcgaagatgccgatcgcaaaaatccggccagccagttgattgacgacctgccactg
ttccaggtcagtcagaggcgggagagccggacggggacaggggcgcaggtgtcggcggtg
gaagaggcattgcgcagcctcaatctcgatgacttgacgccaaggcaagcgatggatgcg
ctctacgatctgaaaaccactctggcgaaatcctga
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