Agrobacterium vitis VAT03-9: RvVAT039_22860
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Entry
RvVAT039_22860 CDS
T08809
Name
(GenBank) pseudouridine synthase
KO
K06178
23S rRNA pseudouridine2605 synthase [EC:
5.4.99.22
]
Organism
avv
Agrobacterium vitis VAT03-9
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
avv03009
]
RvVAT039_22860
Enzymes [BR:
avv01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.22 23S rRNA pseudouridine2605 synthase
RvVAT039_22860
Ribosome biogenesis [BR:
avv03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
RvVAT039_22860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
Motif
Other DBs
NCBI-ProteinID:
BCH65070
LinkDB
All DBs
Position
1:complement(2494508..2496598)
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AA seq
696 aa
AA seq
DB search
MTDKEKFKRPGSKPAGRPFKTSAEKPGKSGPKSFGAQKKFGEKADAAPRPKPDAAPRKSA
TPAAKTGSEDTLKPERISKLLARAGIASRRDVERMIMEGRVAVNGKVLDSPVLNATLADR
IEVDGEPIRGIERTRLWLYHKPSGLVTTNSDPEGRPTVFDNLPEELPRVMSIGRLDINTE
GLLLLTNDGGLARVLELPTTGWLRRYRVRAYGEIDQAKLDTLKDGIAVDGVLYGAIDAVL
DRSQGHNVWITMGLREGKNREIKNVLGALGLEVNRLIRISYGPFQLGDLPESQVQEVRGR
MLRDQLGPRLIEESKANFDAPLYSNAPAEEEDAPAPKAKAKAEEGNWKKDTRPAKPRGFD
NREDAREKALSRLDTRRDGAKPAFGSKPGFGGKPGFKGKPAAGRDGDDAARDGKPKRMPL
GQSRTANVWMAPGARPVSEKKAASDEARKSGPRARPDGAPQTKRYGRTKDGAPTKSLSRH
DPDRAQYAGSDDKDLRVKVSRARDAEGEWIRAEGPDSKPTARGGRAGEGFGGKRDGADRG
PRPAYGDKPAYGDRPARGERAAPSDRPSRGQWPARGDRPDRGERPARSDAPARSDRPYSG
RPTGERAERPTGDRPYDGRPKSRSASGDKPSFGGKPSFGGKPAGKSSFGGKPSSGGKPGF
GGKPGGKPGSARPGSTRSDAGRGPSRGPSSGPKGKR
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgaccgataaagaaaagttcaagcggccgggcagcaagcccgctggccgccccttcaag
acatctgccgaaaaacccggcaaatccggcccaaaaagctttggtgcccagaaaaaattt
ggcgaaaaggccgatgcggcaccgcgccccaaacctgatgcggcaccgcgcaaaagcgca
acacctgctgcaaagacaggcagcgaggacacgctgaagcccgagcggatttccaagctg
ctggcgcgcgctggtatcgcttcgcgccgcgacgtggaacgcatgatcatggaaggccgc
gtggccgtcaatggcaaggtgctggacagcccggtgctgaacgccacgctggccgaccgg
atcgaagtggatggcgagcccattcgcggcatcgagcgtacacggctctggctctatcat
aagccgtcaggcctggtgacgaccaattcggacccggaaggacgcccgaccgtattcgac
aacctgccggaggaattgccgcgggtgatgtcgatcggacggctcgatatcaataccgaa
ggcctgctgctcttgaccaatgatggcggcttggcgcgggtgctggaactgccgaccacc
ggctggcttcgccgctaccgcgtgcgcgcctatggcgagatcgatcaggccaagcttgac
acgctgaaggacggcatcgcggtcgacggtgtgctctatggtgccattgacgcggttctg
gaccgcagccagggccacaacgtctggatcaccatgggtctgcgcgaaggcaagaaccgg
gaaatcaagaatgtgctcggcgcgcttggtcttgaggtcaaccggctgattcgcatttcc
tacggtcctttccaactgggcgacctgccggaatcccaggtgcaggaagtgcgtggccgc
atgttgcgcgaccagctcggtccgcgcctgattgaggaatccaaggccaatttcgacgcg
ccgctctattccaacgcccccgccgaggaagaggatgcgcctgcgccgaaagccaaggcg
aaagccgaggaaggcaattggaagaaggacacacggccagccaagccgcgcggcttcgac
aaccgtgaggacgcccgcgaaaaggcactcagccggcttgacacccgccgcgacggtgca
aagcctgccttcggcagcaagcctggatttggcggcaagcccggcttcaaggggaaacct
gcggctggccgtgacggtgacgatgcagcccgcgatggcaagccgaagcgcatgccactt
ggccagagccgcaccgccaatgtctggatggcaccgggcgcacgtccagtgtctgaaaag
aaggcggcaagtgatgaggcccgcaaaagcggaccccgcgcccgccccgatggcgcaccg
cagaccaagcgttatggccgcaccaaggatggcgcgccaaccaagagcctttcgcgtcat
gacccggatcgtgcacagtatgctggcagcgacgataaggatttgcgcgtcaaggtcagc
cgcgctcgtgatgccgagggtgagtggattcgcgccgaaggccccgatagcaaaccgacg
gcacgtggcggacgcgctggcgaaggctttggcggcaagcgggatggagcagatcgtggt
ccccgtcccgcatatggtgataagcctgcctatggtgatcggccagcgcgtggcgagcgt
gcagcgcccagtgaccgtccgtcgcgcggccaatggcccgcacgtggagatcgcccggac
cggggcgaaagacctgctcgcagcgatgctccggcccgcagtgatcgcccctattccggt
cgccccactggagagagagccgagcggccaaccggcgaccggccttatgacggacgaccc
aaatcccgttccgcttccggcgacaagccgtcctttggtggcaagccatcctttggcgga
aaaccggctggcaaatcatcgttcggcggcaagccgtcttccggtggaaaacctggcttt
ggtggcaagccgggcgggaagcccggttctgccagacccggctctaccagatcagatgca
gggcgtggcccatcgcgtggcccttcctctggccccaaaggcaagaggtaa
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