Agrobacterium vitis VAT03-9: RvVAT039_26460
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Entry
RvVAT039_26460 CDS
T08809
Name
(GenBank) uracil-DNA glycosylase
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RvVAT039_26460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avv03400
]
RvVAT039_26460
Enzymes [BR:
avv01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
RvVAT039_26460
DNA repair and recombination proteins [BR:
avv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RvVAT039_26460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
BCH65430
LinkDB
All DBs
Position
1:complement(2886297..2887178)
Genome browser
AA seq
293 aa
AA seq
DB search
MIAAQDMTAAELAALLAFHAEAGVDWLVEDAPVDRIAQFAAERQARTRATPQQAQPQSPD
QRTATAPVGLQNGPALNRDRPAPRPAASTPLAIPDETAINDARFAAESARSLAELKAALE
GFSSCNLKTSARSTIFAEGPAEAGIMVIGPIPSADDDREGLAFSGRTGALLDRMLAAIGL
RRDALLLTTAIPWRGPGDRMPTPAEAAICRPFIERQIALAEPKAVLLLGNFTARFFFGGT
ATIHSMRGEWRDVAAGGHGVAAMATFHPQELLQAPATKALAWRDLLAFRQRLA
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgattgccgctcaggacatgactgccgccgaacttgccgcccttctggcttttcacgcc
gaagccggggtggattggcttgtggaagatgcgcctgttgaccggatcgcacaatttgca
gcagaacggcaggcgcggaccagggccacgccgcagcaagctcagccccagtctccagat
cagcggactgcgaccgcccctgtcggtttgcagaatggccctgccctcaaccgcgaccgc
ccggcgcctcggcctgctgcatcgacaccgcttgccattcccgatgaaacggcaatcaac
gacgcgcggtttgccgcggagagcgctcgttcgctggctgagttaaaagcggctctggaa
ggattttccagctgcaatctgaagaccagtgcccgctccaccatctttgcagaaggcccc
gctgaggcaggcatcatggtgatcggccccattccgtcagccgatgacgatcgcgaaggt
ctggccttttccggccggactggcgcgcttctcgaccggatgcttgctgccattggcctt
cgtcgcgacgcgctgctattgacaaccgccattccctggcgcggcccaggtgaccgcatg
ccgaccccggctgaagccgccatctgccgacccttcatagagagacaaatcgcactggct
gaaccgaaagccgttctcctgctcggcaatttcaccgcccggttcttcttcggtggaacg
gcgacaatccattcgatgcgcggagagtggcgtgacgtggccgcaggcggtcacggcgtt
gcggccatggcaacttttcatccgcaggaactgctgcaagccccggccaccaaggctcta
gcctggcgagatcttctcgccttccggcagcgattggcttga
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