KEGG   Agrobacterium vitis VAT03-9: RvVAT039_26940
Entry
RvVAT039_26940    CDS       T08809                                 
Symbol
rnc
Name
(GenBank) ribonuclease 3
  KO
K03685  ribonuclease III [EC:3.1.26.3]
Organism
avv  Agrobacterium vitis VAT03-9
Brite
KEGG Orthology (KO) [BR:avv00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    RvVAT039_26940 (rnc)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:avv03019]
    RvVAT039_26940 (rnc)
   03009 Ribosome biogenesis [BR:avv03009]
    RvVAT039_26940 (rnc)
   03036 Chromosome and associated proteins [BR:avv03036]
    RvVAT039_26940 (rnc)
Enzymes [BR:avv01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.3  ribonuclease III
     RvVAT039_26940 (rnc)
Messenger RNA biogenesis [BR:avv03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     RvVAT039_26940 (rnc)
Ribosome biogenesis [BR:avv03009]
 Eukaryotic type
  90S particles
   RNase
    RvVAT039_26940 (rnc)
 Prokaryotic type
  rRNA processing factors
   RvVAT039_26940 (rnc)
Chromosome and associated proteins [BR:avv03036]
 Eukaryotic type
  Gene silencing
   microRNA pathway
    Microprocessor complex
     RvVAT039_26940 (rnc)
SSDB
Motif
Pfam: Ribonucleas_3_3 Ribonuclease_3 dsrm DND1_DSRM
Other DBs
NCBI-ProteinID: BCH65478
LinkDB
Position
1:2942516..2943235
AA seq 239 aa
MKAPKALTAEEREKVEAVIGYHFIGKERLDKALTHSSARPAKGSDYERLEFLGDRVLGLC
VAEHLFKVFRAATEGELSVRLNQLVSAETCAAVADEIQLHRYIRTGADVKKLTDKNMLNV
RADVVESLIAAIYLDAGLEAARAFVLKFWAERASRQDAGRRDAKTELQEWAHAKFAVTPV
YRVADRSGPDHDPSFTVTVEIGKLEPETGIDRSKRAAEQAAATRLLEREGVWTRSTASD
NT seq 720 nt   +upstreamnt  +downstreamnt
atgaaggctcccaaggccctgactgctgaagaacgcgaaaaagtggaggccgtgatcggc
taccactttatcggcaaggaacggctggataaggcgctgacccattccagtgccaggcct
gctaaaggtagcgattatgagcgcctggaattcctgggcgaccgggtgcttggcctttgc
gtggccgagcatttgttcaaggtgtttcgcgctgccaccgaaggcgagttgtcggtgcgg
ttgaaccaattggtcagcgcggagacatgtgcggcggtggccgatgaaattcagctgcat
cgctatatccgcaccggtgccgacgtcaaaaagctgacagacaagaatatgctgaatgtg
cgggccgatgtggtggaaagcctgattgccgccatttatcttgatgctgggctggaagcg
gcgcgtgccttcgtgttgaagttttgggctgagcgtgcctcccggcaggatgccggtcgg
cgtgacgcaaagaccgagctacaggaatgggcacacgcaaaatttgccgtgacacccgtc
tatcgggttgcggaccgctctggaccggatcatgatcccagcttcacggtcacggttgaa
atcggcaagctggagccggaaaccggaattgaccggtcgaagcgcgccgcagaacaagcg
gcggcgacccggttgctggaaagagaaggcgtgtggacgagatccaccgcctcagattga

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