Agrobacterium vitis VAT03-9: RvVAT039_27660
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Entry
RvVAT039_27660 CDS
T08809
Symbol
lptD
Name
(GenBank) LPS-assembly protein LptD
KO
K04744
LPS-assembly protein
Organism
avv
Agrobacterium vitis VAT03-9
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
avv02000
]
RvVAT039_27660 (lptD)
Transporters [BR:
avv02000
]
Other transporters
Pores ion channels [TC:
1
]
RvVAT039_27660 (lptD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LptD
LptC
LptD_N
Motif
Other DBs
NCBI-ProteinID:
BCH65550
LinkDB
All DBs
Position
1:complement(3011496..3013829)
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AA seq
777 aa
AA seq
DB search
MAAIDRGNIKRLFTALLAGVAFSATLVPVPFAYAQTASSNGLVSPKIPADAKLMLAANEM
TYDKDAQKVTAVGGVQINYAGYQMVSKRVEYDQKTGRMMAYGNIELIEPDGNRIYADKMD
VTDDFANGFVNSLRVETTDNTRIAAQKGERVNGDQMILYKGVYTACLPCAEQGRAPFWQI
KAERVIQNGKTHTIRLENARFQLFGKSIALIPSIEVPDNTVKRKSGFLFPEFSTTQKLGF
GVIVPYYWAISPQTDATIKLGGFTSQGVLLDTEVRHQFEDGLATLRFAGIDQLNPGKFDS
GTTDAEKDFRGMVGSTGKFDINPRWSFGWDVMLESDNNFARTYDLEGFNQKTHTNQVYLT
GLGDRNSFDMRAYYFDIQDADSKDVAERKQPIVTPTIDYSYYAPEPFMGGELSATVNFTA
LTRYNSDILNLNNGNERFSGLKGNTTRLTGEVEWKRTFDTPQGVLLTPILAARGDAFGNN
MDAPGSSYSGNYNDTTGVTRSMVTAGLEVRYPWLLSAPGSTHVIEPIGQIFVRPDEQQAG
RLTNEDAQSFVFDASNLFERDKFSGYDRVEGGTRANVGLRYTGSFDSGYTLRSIFGQSYQ
LAGKNSFASSDLVYAGNESGLETAVSDYVGMVGLDTPYGISTSVNARFDEKTFEVARTDS
AIGYHNDQLQTNFIYTQIAAQPNYGYDYDREEIQNASSVKIGDFWSVFGSITWDVKKDNI
NRYGIGVSYADDCTIFSIVYKNKDDDESANDWSIGARLTFRTLGDVKVGDTDVTGFN
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
gtggcggcaattgaccgcggaaatataaaacggcttttcacagccctgctggcaggcgtc
gcctttagtgcgaccctcgttcctgtgccttttgcctatgcgcagacggcctccagcaat
ggtttggtgtcaccgaaaattcccgccgatgcgaagctcatgctcgcagcgaatgaaatg
acatatgacaaggacgcccagaaggtgactgcggtcggcggcgtccagatcaattacgcc
ggctaccagatggtatccaagcgcgtcgaatacgaccagaagaccggtcggatgatggcc
tatggcaatatcgaactgatagagcctgatggtaaccgcatctatgccgacaagatggac
gtcaccgacgacttcgccaatggcttcgtcaacagcctgcgggtggagacgacggataat
acccgcatcgccgcccagaagggcgaacgcgtcaacggcgaccagatgatcctctacaag
ggtgtctacaccgcctgtctgccttgcgcggaacagggccgtgcgcccttctggcagatc
aaggcggaacgggtcatccagaatggcaagacacatacgatccgtcttgaaaacgcgcgc
ttccagctgttcggcaagtcgattgcgctgatcccgtcaatcgaggttcccgacaatacc
gtcaagcgtaaatcgggcttcctgtttcccgaattcagcacgactcagaaactcgggttt
ggggttattgttccctattactgggccatttccccgcagaccgacgccacgatcaaactg
ggtgggtttaccagccagggtgtgttgctcgataccgaagtgcgccaccagttcgaggat
ggattggcgacgctgcgctttgctggcatcgaccaattaaacccaggcaagttcgacagc
ggcaccacggatgccgagaaggacttccgcggcatggtcggctcgaccggcaaattcgat
atcaatccccgctggagcttcggctgggacgtgatgctggagagcgacaacaacttcgca
cgcacctacgacctggaaggtttcaaccagaaaacccataccaatcaggtctatctgacc
ggtcttggggatcggaattccttcgacatgcgcgcctattacttcgacatccaggatgcc
gacagcaaggatgtcgccgagcgcaagcagccgattgtcaccccaaccatcgactatagc
tattatgcgccggaaccgttcatgggcggagaattgtcggcaaccgtcaacttcacggcc
ctgacgcgctataacagcgatattctcaacctgaacaatggcaacgaacgcttcagcgga
ctgaagggcaatacgacccgcctgaccggtgaagtggaatggaagcgcaccttcgataca
ccgcagggcgtgttgctgacacctatccttgccgcgcgtggcgatgcctttggcaataac
atggacgcaccagggtccagctattccggcaattacaacgacaccacaggcgtgacccga
tcgatggtgacggccgggcttgaggttcgctatccatggctgctcagcgcgccaggcagc
acgcatgtgatcgagccaattggccagatctttgtccgacccgacgagcaacaggcgggc
cgacttacgaatgaggatgcgcaaagcttcgtcttcgatgccagcaacctgtttgagcgc
gataagttctccggctatgaccgggttgaaggcggtacgcgtgccaatgtcggcctgcgc
tataccggctcgttcgacagcggttatacattgcgcagtatcttcgggcagtcctaccaa
ctggccggcaaaaactcctttgcctcctcggatctggtctatgccggcaacgaatcgggc
ctggaaaccgcggtgtccgattatgtcggcatggtcgggctggacacgccttacggcata
tccacctcggtcaatgcgcggttcgatgaaaagacctttgaggtcgcacggacggattcg
gccatcggttatcacaacgaccaactgcaaacgaatttcatctacacccagatcgcggcg
cagcctaattacggctatgattacgaccgcgaagagatacagaacgccagctcggtcaag
attggcgatttctggtcggtcttcggttcgattacttgggatgtgaagaaggacaatatc
aaccgctatggcatcggcgtttcctatgccgacgattgcacgatcttctccatcgtttac
aagaacaaggacgatgacgaatccgccaatgactggtccatcggcgcccgcctgacattc
cgcacgttgggcgatgtcaaagtaggcgatactgacgtcaccgggttcaattga
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