Agrobacterium vitis VAT03-9: RvVAT039_28030
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Entry
RvVAT039_28030 CDS
T08809
Symbol
rnd_2
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
avv
Agrobacterium vitis VAT03-9
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
avv03016
]
RvVAT039_28030 (rnd_2)
Enzymes [BR:
avv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
RvVAT039_28030 (rnd_2)
Transfer RNA biogenesis [BR:
avv03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RvVAT039_28030 (rnd_2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
wHTH-Calcineurin_assc
Peptidase_M61_N
Motif
Other DBs
NCBI-ProteinID:
BCH65587
UniProt:
A0AAN2BUP9
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All DBs
Position
1:complement(3051561..3052715)
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AA seq
384 aa
AA seq
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MISTTQDLEAACEKLAKSEFITIDTEFLRETTFWPELCLIQMASPDLEVIVDPLAEGLDL
APFFKLMANGDVIKVFHAARQDIEIIFHLGNLIPHPIFDTQVAAMVCGFGDSVSYDQLVQ
KIKNIHIDKSSRFTDWSRRPLSEKQLDYALADVTHLRDVYLTLNAELEREGRASWLSEEM
AILESRDTYDLHPDDAWQRLKMRLRKPQELMVMKAVTAWREREARARNVPRSRVIKDDAI
FEIAQQQPRDVEALGRLRTIPKGWERSAPGGAIIEAVNAALAIPKAEWPQVQRQNHVPEG
TAPAVELLKVLLRLTCEQHGVAAKMIANTDDLEKIAVEGEQADVQAMRGWRRDLFGESAL
KLINGGVALRFVGKKIEAVEFIEP
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atgatttctacaactcaagatttagaagccgcttgcgaaaaactggccaaatctgaattt
atcaccattgatactgaattcctgcgtgaaaccaccttctggccggagctgtgcctgatc
cagatggccagtcccgatctagaggtcattgtcgatccgctggccgaggggctcgacctt
gcaccctttttcaagttgatggccaatggcgatgtgatcaaggtgtttcacgccgcgcgc
caggacatcgaaatcatttttcacctgggcaatctcattccccatccaatcttcgacacc
caggtggcggccatggtctgcggctttggcgacagcgtgtcctatgaccagctggtccag
aagatcaagaatatccatatcgataaaagctcgcgctttaccgactggagccgccgtccg
ctttcggaaaagcagctggattacgcgctcgccgatgtcacccatctgcgcgatgtctac
ctgactctgaacgcagaactggaacgtgagggccgcgccagctggctgagcgaagaaatg
gccattcttgaatcccgcgacacctatgacctgcatcccgacgacgcctggcagcgcctg
aagatgcggctgagaaaaccgcaggaactgatggtgatgaaagccgtgaccgcctggcgc
gagcgtgaggcccgcgcccgcaacgtcccccgctcacgggtcatcaaggacgacgctatt
ttcgaaatcgcccagcagcagcccagggatgtcgaggcgcttggacggctccggaccatt
ccgaagggttgggagcgctcggcaccgggcggcgcgatcatcgaggcggtcaatgcggcc
ctggcgatccccaaggccgaatggccgcaggtccagcgccagaaccatgtgccggaaggc
acggcaccggcggtggaactgctcaaggtgctgctgcgtctgacctgcgaacagcatggc
gtcgccgccaagatgatcgccaataccgacgacctggaaaagattgccgtcgagggcgaa
caggccgatgtgcaggccatgcgcggctggcggcgtgatctgttcggcgaatcggcgctg
aagctgatcaatggcggggttgccctccgcttcgtcggcaagaagatcgaagccgtcgaa
tttatcgaaccttga
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