Agrobacterium vitis VAT03-9: RvVAT039_28060
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Entry
RvVAT039_28060 CDS
T08809
Symbol
aspS
Name
(GenBank) aspartate--tRNA(Asp/Asn) ligase
KO
K01876
aspartyl-tRNA synthetase [EC:
6.1.1.12
]
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
RvVAT039_28060 (aspS)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
avv01007
]
RvVAT039_28060 (aspS)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
avv03016
]
RvVAT039_28060 (aspS)
03029 Mitochondrial biogenesis [BR:
avv03029
]
RvVAT039_28060 (aspS)
Enzymes [BR:
avv01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.12 aspartate---tRNA ligase
RvVAT039_28060 (aspS)
Amino acid related enzymes [BR:
avv01007
]
Aminoacyl-tRNA synthetase
Class II (A)
RvVAT039_28060 (aspS)
Transfer RNA biogenesis [BR:
avv03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
RvVAT039_28060 (aspS)
Prokaryotic type
Other AARSs
RvVAT039_28060 (aspS)
Mitochondrial biogenesis [BR:
avv03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
Other mitochondrial DNA transcription and translation factors
RvVAT039_28060 (aspS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2
tRNA_anti-codon
GAD
tRNA-synt_2b
Motif
Other DBs
NCBI-ProteinID:
BCH65590
LinkDB
All DBs
Position
1:3055906..3057711
Genome browser
AA seq
601 aa
AA seq
DB search
MHRYRSHTCAALRKSDVGATVRLSGWVHRVRDHGGVLFIDLRDHYGITQVVADPDSPAFK
LAETVRGEWVIRIDGVVKARADETVNKAMQTGEIELYAQEIEILAVAKELPLPVFGEPDY
PEDVRLKYRFIDLRRETLHKNIVKRTQIISSMRNGMSELGFAEYTTPILTASSPEGARDF
LVPSRIHEGQFFALPQAPQQYKQLLMVAGFDRYFQIAPCFRDEDPRADRLPGEFYQLDVE
MSFVTQEDVWTTMEPMMTKVFEQFAEGKPVTKQWPRIPYDEAIRKYGSDKPDLRNPVVMQ
AVTEHFADSGFKIFASMIAANPKVEVWAIPVKHTEATGAIGRAVCDRMNAWAQSTGQPGL
GYIFWKEEDGKVAGSGPLAKNIGEERTAAIAAQLGLGAGDACFFVAGDPAKFYKFAGEAR
TRAGEELNLIDRDRFEMCWIVDFPFYEWSEEEKKIDFAHNPFSMPQGGLEAFDSQDPLTL
KAYQYDAVCNGFEIASGSIRNQSPELMVKAFEKVGLSQTDVEERFGGLYRAFQYGAPPHG
GCAFGIDRVVMLLVGAKNLREISLFPMNQQAQDLLMGAPAPATPTQLRELALRVVPTPKK
D
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgcatcgttatcgcagccacacctgtgccgctctccgcaagtccgatgttggtgccacc
gtgcgcctttccggctgggtccaccgcgtccgcgaccacggcggcgttctcttcatcgac
cttcgtgaccattacggcatcacgcaggtggtggccgatcccgatagcccggccttcaaa
ctggctgagaccgtgcgcggcgaatgggtgatccgcatcgatggcgtggtcaaggcccgc
gccgatgagaccgtcaacaaggccatgcaaaccggcgagattgagctttatgcgcaggaa
atcgaaattctcgccgtcgccaaggaattgccgctgccggtgtttggcgagccggactat
ccggaagatgtgcgcctgaagtaccgcttcatcgaccttcgtcgcgaaaccctgcacaag
aacatcgtcaagcgcacccagatcatttcgtccatgcgcaacggcatgagtgagcttggc
tttgccgaatacaccacgccaatcctgaccgcctcttcgccagaaggtgcgcgcgacttc
ttggtgccaagccgtatccatgaaggccagttcttcgcgctgccgcaggctccgcagcaa
tataagcagctgttgatggtggccggtttcgaccgctacttccagattgcaccctgcttc
cgcgatgaagacccgcgtgccgaccgcctgccgggcgagttctaccagctcgacgttgaa
atgagcttcgtgacccaggaagatgtctggaccacgatggaaccgatgatgaccaaggtg
ttcgaacagtttgccgaaggtaagcccgtgacgaagcaatggccacgcattccctatgat
gaagccatccgcaaatacggctccgacaagccagacctgcgcaaccctgttgtcatgcag
gccgtgaccgagcatttcgctgattcaggcttcaagatttttgcaagcatgattgccgcc
aacccgaaggttgaggtctgggcgatcccggtcaagcatacggaagcaacgggcgcgatt
ggccgcgccgtttgcgaccgcatgaatgcctgggcgcagtccaccggccagccgggcctt
ggctatatcttctggaaggaagaagacggcaaggttgccggttccggccccttggccaag
aacattggcgaagagcgcaccgccgccattgccgcccagctcggccttggcgctggcgat
gcctgcttcttcgtcgccggtgatccggccaagttctataagttcgctggcgaagcccgc
acccgtgcaggtgaagagctgaaccttattgaccgcgaccggtttgaaatgtgctggatt
gtggacttcccgttctacgaatggagcgaggaagaaaagaagatcgacttcgcccacaac
ccgttctccatgccgcagggcgggttggaagccttcgacagccaagacccgctgacactc
aaggcttaccaatatgacgccgtctgcaacggctttgaaatcgcttccggctcgatccgt
aaccagtcgccagaactgatggtcaaggcgttcgagaaggttggtctcagccagacggac
gtggaagaacgcttcggcggcctctaccgcgccttccaatacggcgcaccgccgcatggc
ggctgcgcattcggtatcgaccgcgtggtcatgctgctggtgggcgccaagaacctgcgc
gaaatctcgctgttcccgatgaaccagcaggcgcaggatctgttgatgggcgcaccggct
ccggcaacgccgacccagctgcgcgaattggcgttgcgcgtggtgccgacgccgaagaaa
gactga
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