Agrobacterium vitis VAT03-9: RvVAT039_28200
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Entry
RvVAT039_28200 CDS
T08809
Name
(GenBank) amidase
KO
K21470
L,D-transpeptidase YcbB
Organism
avv
Agrobacterium vitis VAT03-9
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
avv01002
]
RvVAT039_28200
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
avv01011
]
RvVAT039_28200
Peptidases and inhibitors [BR:
avv01002
]
Cysteine peptidases
Family C82
RvVAT039_28200
Peptidoglycan biosynthesis and degradation proteins [BR:
avv01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
RvVAT039_28200
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Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
BCH65604
UniProt:
A0AAE5AZY7
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All DBs
Position
1:3073114..3074439
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AA seq
441 aa
AA seq
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MADKIKLVSVSRRALLRGAALVGASTLAGTAMAQSAVDELINARSRGNWDDQFDAQTSRA
VASVTSNSPMLSATNLPNLQLAISAYQQIVAQGGWPQVNPSVKLKLGSIDPVVQQLRQRL
MISGDLGQEAGMSNSFDTYVDGAVKRFQARHGLPTDGALGEYTLKAMNISADVRLNQLNT
NLVRLQAMSGDLGNRYVMVNIPSMSIEAVENDRVALRTNAVVGRIDRPTHSINSKIYEVI
LNPYWTAPRSIVEKDIVPLMRKDPTYLTRNNIRLFDGKGQEVAPETVDWNAPKAPNLMFR
QDPGKINAMASTKINFHNPNNEYLHDTPQQGLFNKLMRFESSGCMRVQNVRDLITWLLRD
TPGWNRQEIERVISTRQNNVIKLSQEVPVYIVYITAWSAKDNVVQFRDDIYKRDGDAQLA
LQTNIGVEQNPGRIEDDNLPQ
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaagattaaactggtttcggtctctcgcagagcgttgctgagaggcgcggca
ttggtgggagcatccacgctggccgggaccgccatggcgcaatctgccgtcgacgagctg
atcaatgctcgctcgcggggcaattgggatgaccagttcgatgcccagacgtcacgtgcg
gtcgcctcggtgacatcaaattcgccgatgttgagcgccaccaacctgccgaacctgcaa
ttggccatttccgcctatcagcagatcgtcgcccagggcggttggccgcaggtcaatccc
tcggtgaaattgaaactcggctctattgatccggttgtgcagcaactgcgccaacgcctg
atgatctcaggcgatcttggccaggaagcgggcatgtccaattctttcgatacctatgtt
gacggtgccgtgaagcgttttcaggctcgtcacggtctacccacagatggtgcgcttggc
gaatatacgctgaaagcgatgaatatttctgccgatgtgcgtctcaaccagctcaatacc
aatctggtgcgcctgcaggcaatgtccggtgatctgggcaaccggtatgtcatggtcaac
attccctcgatgtctatcgaggctgtcgaaaatgatcgagttgcattgcgtaccaatgcc
gttgttggacgtatcgaccgcccgacccattccatcaattccaagatctatgaagtcatc
ctgaatccctactggactgcgccgcgctcgatcgtcgaaaaggacatcgtgccgctgatg
cgcaaggaccccacctatctgacgcgcaacaatatccgtctcttcgatggcaaaggccag
gaagtggccccggagactgtggattggaacgcgcccaaggcgcctaacctgatgttccgt
caggaccctggcaagatcaacgccatggcctcgacgaagatcaattttcacaatccgaac
aatgaatatctgcacgatacgccgcagcagggcctgttcaacaaactgatgcgctttgaa
tcctccggctgcatgcgcgtccagaacgtccgtgatctgatcacatggttgctgagggat
acgcccggctggaaccgtcaggaaatcgagcgggtcatctccacgcgccagaacaatgtg
atcaagctttctcaggaagtacccgtctatatcgtttacatcacggcgtggtctgccaag
gacaatgtcgtgcagttccgtgatgatatctacaagcgtgatggcgatgcccagttggcg
ctgcaaaccaacattggcgtggagcaaaatccgggccggattgaggacgacaatttgccg
cagtaa
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