Gillisella vitis VAT03-9: RvVAT039_29020
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Entry
RvVAT039_29020 CDS
T08809
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
avv
Gillisella vitis VAT03-9
Pathway
avv03030
DNA replication
avv03430
Mismatch repair
avv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RvVAT039_29020 (dnaE)
03430 Mismatch repair
RvVAT039_29020 (dnaE)
03440 Homologous recombination
RvVAT039_29020 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avv03032
]
RvVAT039_29020 (dnaE)
03400 DNA repair and recombination proteins [BR:
avv03400
]
RvVAT039_29020 (dnaE)
Enzymes [BR:
avv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RvVAT039_29020 (dnaE)
DNA replication proteins [BR:
avv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RvVAT039_29020 (dnaE)
DNA repair and recombination proteins [BR:
avv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RvVAT039_29020 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
McdB_C
HROB
nlz1
Motif
Other DBs
NCBI-ProteinID:
BCH65686
LinkDB
All DBs
Position
1:3158360..3161848
Genome browser
AA seq
1162 aa
AA seq
DB search
MSDMGASGQAVVNAGPGFVHLRVHSAYSLLEGALPLKKILSKVASDQQPAIAITDTNNLF
IALEFSQKALSDGLQPIIGCQLSIDMEDANEEKRGNSSLAKYPAIVLLAADPAGYERLVD
LVSRAYLQGDNTQSVHIAASWLEEIGTDGLIALTGAAGGPVDLPVKDGHQAQALSRLQTL
KSLFGDRLYIELQRHQGYDRVHESRMIALAYDHDIPLVATNEAFFPSRDDYDAHDALMAV
AHNAIVSDDRRFRLTPDHYLKSRKEMQVLFRDLPEALENTVEIASRCSFVLDTRNPILPR
FTGGSDDPEEAERAEAGELRRQAIEGLDDRLAKLGMAPGYDEKEYRDRLDFELGVIERMK
FPGYFLIVADFIKWAKSQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPER
VSMPDFDIDFCQDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQV
DRICKLVPNNPANPTPLSKAIEEEPKFQEEAEKEPVVARLLDIAQKIEGLYRHASTHAAG
IVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFCRL
RDIEIDLATIPLDDEKTYQMLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYR
PGPMENIPVYNARKHGEEEIESIHPTIDYLLKETQGVIVYQEQVMQVAQVLSGYSLGEAD
LLRRAMGKKIKEEMDKQRARFVDGAVKNGVSKPQADNIFDLLAKFANYGFNKSHAAAYAI
VSYQTAYMKAHYPVEFLAASMTLDMANTEKLVDFRQDAGRLGIEVVPPSVQTSFRHFQTG
PNRIYYSLAALKGVGDAAVEHIVTVRADTPFADLEDFCLRIDPKQINRRVFESLIFAGAF
DCFGRDRPELLAGMDRIIGYAQRAQENAVSGQSDMFGSGGATGPERISFPTYTPWLPSEK
LMREFQVLGFYLSAHPLDTYKPLLEKMRVQNFVDFSGAVRQGATAGRLAGTVISKQERKT
RTGNKMGIVTFSDATGQFEAVLFSEGLNQYRDLLESGKSLVITVAAEERPEGIGLRIQTA
QSLEEKSLQMQNTLRVYLRDSSPLRALAAHLNTKGDGLVSFVVIKEDGRREIEVELNQRF
RITPEIAAAMRSAPGVVDVELV
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatatgggcgcaagcggacaagctgtagtgaatgcgggtccaggtttcgtccat
ttaagagtgcattcggcctattcgctgctggaaggtgcgctgccgctgaagaagatcctg
agcaaggttgcctctgaccagcaaccggccattgccattaccgataccaataacctgttc
atagcgctcgagttttcccagaaggcgctcagcgatggcttgcagccgatcattggctgt
caattgtccatcgatatggaagacgccaatgaggaaaagcggggcaatagctctcttgcc
aaatatccggccattgtgcttctcgccgccgatccggcgggttatgagcggctggtagac
ttggtcagccgtgcctatctccagggcgataatacgcagtctgtgcatatcgccgcctcc
tggttggaagagatcggcacggatggcctgatcgccctgacgggtgcagcaggcggtccg
gtcgatctgccggtgaaggacggccatcaagcgcaggcgctgtcgcggcttcagacgctc
aaatccctgttcggggatcggctttatatcgaattgcagcgccaccaaggttatgaccgt
gtacatgaaagccgaatgatcgcgctcgcttatgatcatgatattccattggttgccacc
aatgaggccttttttcccagccgtgatgattatgatgcccatgacgcgctgatggcggtt
gcccataatgccatcgtgtccgacgaccggcggtttcgcctgaccccggatcactatctg
aaaagccgcaaggaaatgcaggtcttgtttagggatctgccggaagcgcttgaaaacacg
gtggagattgccagccgctgttctttcgttctcgacacccgcaaccctatactgccgcgc
tttaccggtggtagcgacgatccggaagaggccgagcgcgccgaggctggggagttgcgc
cgccaggccatcgagggattggatgaccggctggcaaagcttggcatggcaccaggctat
gatgagaaggaatatcgagatcggctggatttcgagctcggcgtcatcgaacggatgaaa
tttcccggctacttcctgatcgttgccgacttcatcaaatgggccaagagccaggacatt
cccgttggccctggccgtgggtccggtgcgggttcgctggtcgcctatgccttgaccatt
accgatgtcgatccgctgcggttctccttgctgttcgaacgctttctcaatcctgagcgc
gtctcgatgcccgacttcgacatcgacttctgccaggatcgccgtgaagaggtgatccgt
tatgtgcagcgcaaatatgggcgcgagcaagtggcgcagatcatcaccttcgggtcgctc
caggcccgtgcagccttgcgcgacgttggccgtgtgctggaaatgccctatgggcaggtc
gatagaatctgtaagctggtgccgaacaatccggccaatccgacccccttgtccaaggcc
atcgaagaagagccaaagtttcaggaggaggcggagaaggagcctgtcgttgcccgtctt
ctggatatcgcccagaagatcgaggggctttatcgccacgcctcgacccatgccgccggt
attgttatcggtgaccgcccgctgtccaagctggtaccgatgtatcgcgatccgcgctcg
gatatgccggtcacccagttcaacatgaagtgggtggagcaggccgggctggtcaagttc
gactttctcggattgaagacgctgacggtgttgaaaaccgccgtggatttctgccggttg
cgcgatatcgagatcgatctggcaaccattccgctggacgacgaaaaaacctaccaaatg
ctgtcgcgcggcgagaccgtcggtgtgttccaggtggaaagcgccggcatgcgcaaggca
ctgatcggtatgcggcccgactgtatcgaggatattatcgcgctggtggcgctctatcgt
ccggggccgatggagaatattccggtctacaatgcccgtaagcatggtgaggaggagatc
gaatcgatccatccgaccatcgattaccttctgaaggaaacccagggggttatcgtctat
caggagcaggtcatgcaggtggcccaggttctgtcgggctattcgcttggtgaagcggat
cttctgcgccgcgccatgggtaagaagatcaaggaggaaatggacaagcagcgcgcccgt
ttcgtcgatggcgcggtgaagaatggcgtctcaaagccccaggccgacaacattttcgac
ctgctggcgaagtttgccaattacggcttcaacaaatcccacgccgcagcctacgcgatt
gtctcctaccagaccgcctatatgaaggcccattatccggtggagtttctggcagcgtcg
atgacactcgatatggccaataccgaaaaactggtggatttccgccaggatgccgggcgt
ctcggtattgaggtcgtgccaccgtcggttcagacctctttccggcacttccaaacgggg
ccgaacaggatttactattcgctggctgccttgaagggcgtcggcgatgcagccgtcgag
catatcgtaacggtccgcgccgatacgccctttgccgatctcgaggatttttgtctacgg
atcgacccgaagcagatcaatcgccgggtatttgaaagcctgatttttgccggtgccttc
gattgttttggccgcgaccgtcctgaattgctggctggcatggaccggatcatcggctat
gcgcaacgcgcccaggaaaatgccgtcagcggccagtcggacatgttcggctctggcggc
gccacagggccggagcggatttcctttccgacctatacaccctggctgccatccgaaaag
ctgatgcgggagtttcaggttctgggtttctatctctcggcccatccgctcgacacctat
aaaccgctgctggaaaagatgcgcgtgcagaatttcgtcgatttttccggcgcggtgcgt
caaggcgcgacggcgggtcggctggcgggcacggtgatttcaaagcaggagcgcaagacg
cgaaccggcaacaaaatgggtatcgttaccttctccgatgccactggccagttcgaggct
gtgctattttccgaaggcttgaaccagtatcgcgacttgctcgagtcgggtaagtcgctg
gtgatcacggttgctgcggaagaacggccggaaggcattggccttcgtatccagacggcg
cagtctttggaagaaaaatccttgcagatgcaaaatacgctgcgcgtctatttgcgtgat
tccagcccgttgcgggcgctcgccgcccatctcaataccaagggcgatggactggtctcc
ttcgtggtgatcaaggaggatggacgccgcgaaatcgaggtcgaactcaatcaacgtttc
cgaatcacaccggaaatcgccgcggccatgcggtccgcgccgggtgtggtggatgttgaa
ttggtatag
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