Agrobacterium vitis VAT03-9: RvVAT039_29450
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Entry
RvVAT039_29450 CDS
T08809
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
avv
Agrobacterium vitis VAT03-9
Pathway
avv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RvVAT039_29450 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avv03019
]
RvVAT039_29450 (rne)
03009 Ribosome biogenesis [BR:
avv03009
]
RvVAT039_29450 (rne)
Enzymes [BR:
avv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RvVAT039_29450 (rne)
Messenger RNA biogenesis [BR:
avv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RvVAT039_29450 (rne)
Ribosome biogenesis [BR:
avv03009
]
Prokaryotic type
rRNA processing factors
RvVAT039_29450 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BCH65729
LinkDB
All DBs
Position
1:complement(3201179..3204271)
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AA seq
1030 aa
AA seq
DB search
MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEHGRHDDGDFEPVRSRDPGERDQPV
IADPAEFANEAEEVAGLAVNQADDDHAQTTAEQPADAPQAEASQTDAVQADGVPAEPQAD
EAAPEAAAKPKARRPRKPRKKAGEVEASADEAVAEPVAVESDETPDDGSSNGSMAAMVDT
DSISEETDSRHRHDDDDDDDDDDGEKEEIESVGAEDAMEEVPDRVRRTPRKQYRIQEVIK
RRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNPADRKRLKEV
ARDLEVPLGMGVILRTAGANRTKVEVKRDFEYLMRLWENVRTLTLNSTAPCLVYEEGSLI
KRSIRDLYNKDISEIVVSGEEGYREAKDFMKMLMPSHAKVVQPYRDIHPIFSRSGIEAQL
DRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREYSIEDTALQTNLEAAEEVARQLR
LRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEMSRQRIRAS
VLESTTQVCQHCSGTGLIRSQSSVALHVLRGVEEYLLKSTTHDITVRTLPETALYLLNHK
RGSIVDYENRFGVSIIIDSDASVGHQHFAIDKGEPVANPVRIETLLPLISEPEEDDPIIE
IEEEDDEDVVEAPVQAQPASSGNAAANAAEDGNRKRKRRRRRRGKNGNGHADGQQNAAGG
DEGDDDSEGDDDAEDTAEDRDDSVEASDASEDGNSESQRRKRRRRGKRGGRRGRDENGVS
ADAEGNDTAEDDDSAEESVQADADQAVAVAEVPSDAVADSVAVAAEVSVPATEAVKADEP
VAAKPRRARKPKASAKTEAADSVETVTEPAAVPEAVVVEAPAAAVEPLATSPVSEEPVAT
APVQDVSAPEPASESTSEPEAVSDASAEKPVRANRSSNVSTSEPVVTSVTNGDEAPKPKK
GGWWQKRGFL
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaaatgctaatcgatgcgtctcacgaagaagagacgcgcgtcgttgtcgtt
cgcggtaacaggatcgaagaattcgattttgaatcccagcataagaaacagatccgcggc
aacatctatctggccaaagtcacacgggtcgagccttccttgcaggccgccttcgtcgat
tacggcggcaatcgtcacggcttcctggcttttgcagaaatccatcccgattattatcag
atccctcttgccgaccgtcaggccttgctgaaggctgaagccgaagagcatggccgtcac
gacgacggcgatttcgagccggtgcgcagcagagatcccggcgaacgcgaccagccggtg
attgccgatccggccgaattcgccaatgaagctgaagaagtcgctggtctcgccgtcaac
caggccgatgacgatcacgcgcaaaccacagctgagcagcccgcagatgcgccgcaagcc
gaggcgtcacagactgacgcagtgcaggccgacggagtaccggctgagccgcaagcagac
gaggcagcccccgaggctgcagcaaagcccaaggcacgccgtccgcgcaagccccgcaag
aaggcaggcgaggttgaagccagcgccgatgaagccgtcgcagaacctgtggccgtcgaa
agtgacgagacaccagatgacggatcgagcaatggcagcatggccgccatggtcgacacg
gactcgatctccgaagaaaccgatagccgccatcgtcatgacgatgatgacgacgacgat
gatgatgacggcgagaaggaagaaatcgaatctgttggcgccgaagacgccatggaagag
gttcccgaccgggtgcgccgcacgccgcgcaagcaatatcgcatccaggaagttatcaag
cgccgccagatcctgctggtgcaggtcgccaaggaagaacgtggcaacaagggtgctgcg
ctgaccacctacctgtctctggcaggccgttattcggttctgatgccgaatacggcgcgc
ggcggcggcatttcgcgcaaaatcaccaaccctgccgaccgcaagcggttgaaggaagtg
gcccgcgatctggaagtgccgctgggcatgggcgttatcctgcgcaccgcaggtgccaat
cgcaccaaggtcgaggtcaagcgcgatttcgaatatctgatgcgtctttgggaaaacgtt
cgcaccctgacactgaattccaccgcaccttgcctcgtctatgaggaaggctcactgatc
aagcgctcgatccgcgacctgtataacaaggatatcagcgagatcgtggtgtcaggcgaa
gaaggctatcgtgaagcgaaagacttcatgaaaatgctgatgccgagccacgccaaggtg
gttcagccctaccgcgacattcacccgatcttctcgcgctccggcatcgaggcgcaactg
gaccggatgttgcagccgcaggtgacgctgaagtccggtggttatatcatcatcaaccag
accgaagcgctggtgtccatcgacgtgaactcgggtcgttcgacccgcgaatattccatc
gaagacaccgccctgcaaaccaatctggaagccgcggaagaagtggcccgccagttgcgc
ctgcgcgaccttgccggtctgatcgtcatcgacttcatcgacatggaagagaagcgcaac
aaccgctccgtcgagaagaagctgaaggattgcctgaaaaacgaccgcgcccgtattcag
gtcggacgtatttcgcatttcggtctgctggaaatgtcgcgtcagcgcattcgcgccagc
gtgttggaatcgaccacccaggtctgccagcattgctccggcacaggcctgatccgttcg
cagtcctccgttgccctgcatgtactgcgcggcgtcgaagaatatctgctgaaaagcacc
acgcacgatattaccgtgcgtaccctgccggaaacggcgctttacctgctcaaccacaag
cgcggctcgattgtcgattatgaaaaccgcttcggcgtgtcgatcatcatcgactcggat
gccagcgtcggtcaccagcatttcgccatcgacaagggcgagccggttgccaatccggtc
cgcatcgagaccttgctgccactgatcagtgagccggaagaggacgatccgatcattgag
atcgaggaagaggatgacgaggacgtcgtcgaggctcctgttcaggcacagcccgcatcc
agtggcaatgctgcagcaaacgccgccgaagacggcaaccgcaagcgcaagcgccgccgc
cgccgccgtggcaagaatggcaatggccatgccgatggacagcagaacgctgccggcggt
gacgaaggcgacgatgacagcgaaggcgatgacgacgccgaagatacggcagaagaccgc
gatgatagtgtcgaggcctctgacgcttctgaagacggcaacagcgaaagccagcgccgc
aagcgccgccgtcgtggcaagcgtggtgggcgtcgtggtcgtgatgaaaatggtgtgagc
gccgatgccgaaggtaatgacactgctgaagatgacgattctgctgaagagtcagtgcaa
gccgatgccgatcaggctgtcgccgtcgctgaggttccatccgatgccgtcgccgacagt
gttgcggtggctgccgaggtcagtgtcccagcaacagaggccgtgaaagccgatgagcca
gtggctgccaagccacgccgggctcgcaagccgaaagcgtcagccaaaaccgaagccgct
gacagcgtcgaaacggtaacggaacctgctgctgtgcctgaggctgtggttgtcgaagca
ccggctgctgctgtcgagcctttggccacctcccccgtctcggaagagccggtagcaacg
gcacctgttcaggacgtctctgcgccagagcctgcatctgaatccacaagtgagccagag
gccgtaagcgatgccagtgctgaaaagccggtgcgcgccaatcggtcgtccaatgtcagc
acatccgaaccggtcgtcacctcggtgaccaatggcgacgaagctccgaagcccaagaag
ggcggatggtggcagaagcgcggcttcctctag
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